PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04671g01011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 143aa MW: 15951.4 Da PI: 9.1366

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04671g01011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	85.5	1.5e-26	8	78	4	75
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleel 75 ssse+vCyv+CnfC+tilavsvP ts++++vtv+CGhC++llsvn+ q l+ ++ l+++ + ++ + Niben101Scf04671g01011.1 8 SSSSERVCYVHCNFCKTILAVSVPCTSMMTIVTVKCGHCAKLLSVNIGSLLQSLSLQD-LQKQQRSNIEDAS 78 6899***********************************************9999888.8999888887655 PP
2	YABBY	116.4	4.9e-36	73	134	108	170
YABBY 108 evprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + Pek+qrvPsaynrfikeei rikasnPdi+hreafs+aaknWahfP+ihfgl Niben101Scf04671g01011.1 73 NIEDAS-KACAPEKKQRVPSAYNRFIKEEIPRIKASNPDITHREAFSTAAKNWAHFPHIHFGL 134 333333.35579*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.5E-35	70	134	IPR006780	YABBY protein
SuperFamily	SSF47095	4.45E-8	78	127	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.7E-5	82	128	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MSLDITYSSS SERVCYVHCN FCKTILAVSV PCTSMMTIVT VKCGHCAKLL SVNIGSLLQS 60 LSLQDLQKQQ RSNIEDASKA CAPEKKQRVP SAYNRFIKEE IPRIKASNPD ITHREAFSTA 120 AKNWAHFPHI HFGLKLEGNK QAN

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019234442.1	6e-91	PREDICTED: axial regulator YABBY 5-like isoform X1
Swissprot	Q9XFB0	3e-59	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1J6KYN5	1e-89	A0A1J6KYN5_NICAT; Putative axial regulator yabby 2
STRING	XP_009792033.1	6e-88	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-57	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]