PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04675g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 209aa    MW: 23895.8 Da    PI: 6.6716
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04675g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.2e-181464146
                              TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqk 46
                              rg W++eEde+l+++  ++G +      +W+ Ia++++ gRt++++k++w++
  Niben101Scf04675g00001.1 14 RGQWSPEEDEILKNYLLKHGLKrcgkscRWSVIASKLP-GRTDNDVKNHWNT 64
                              89************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.22E-16375IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-21572IPR009057Homeodomain-like
PROSITE profilePS5129420.309970IPR017930Myb domain
SMARTSM007172.6E-151368IPR001005SANT/Myb domain
PfamPF002492.0E-151464IPR001005SANT/Myb domain
CDDcd001671.84E-131766No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRTPCCDKT KVKRGQWSPE EDEILKNYLL KHGLKRCGKS CRWSVIASKL PGRTDNDVKN  60
HWNTKLKKKL LATNANSTSN FDDSKQVFHS SSMVPKEEEE QAAYSPVQFP VPYWDSGGFS  120
SILNNNKSIV QHDQKQFPLP RFTKDYSKIS TSREEPMNFG SSTVDMHENI DLAWFNTFEG  180
FPMDDEIMGA GLWTQQSVLE DIDFPVTFS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800251.11e-130PREDICTED: transcription factor RAX1-like
TrEMBLA0A1U7YE681e-129A0A1U7YE68_NICSY; transcription factor RAX1-like
STRINGXP_009800251.11e-129(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1559057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23000.14e-23myb domain protein 37