PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04684g02004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 260aa MW: 30748.8 Da PI: 5.2801

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04684g02004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.8	2.8e-13	4	41	3	40
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 i+++ +r+ f kR++ ++KK +ELS+LCd+++++ii Niben101Scf04684g02004.1 4 IQDHKKRNSAFQKRKACLIKKISELSILCDIKACMIIH 41 89999*******************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.0E-5	1	52	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.16E-15	1	87	IPR002100	Transcription factor, MADS-box
CDD	cd00266	8.35E-15	1	78	No hit	No description
PROSITE profile	PS50066	12.839	1	40	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.8E-13	4	43	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MELIQDHKKR NSAFQKRKAC LIKKISELSI LCDIKACMII HEGNNCEEIW PNDRNQVQEL 60 INLYKTQPIE DRSKRENSLC SFLVKEKKKA EIKMEKMKQK IKTEKYPTWD SRFNYLSEKE 120 LRNLAGVLEK KMENAKEKSE FLKSSRNINQ DSNQEIWDYP ELMDNFNQSI PQPISYMDNQ 180 FFQELTSDFD HVNSVGILDN GQLNIDDYEF GNSDYMKIEA EEWLVNNGII GSSSRMQPME 240 LNHYPFIYTA STQMPYGYFQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016484291.1	1e-164	PREDICTED: agamous-like MADS-box protein AGL82
TrEMBL	A0A1S4B5Z1	1e-163	A0A1S4B5Z1_TOBAC; agamous-like MADS-box protein AGL82
STRING	XP_009598741.1	1e-160	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6342	12	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	8e-14	M-type_MADS family protein