PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04684g03016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 246aa    MW: 26832.3 Da    PI: 8.5539
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04684g03016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151457144
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                              +g+WT+eEd +lv++++ +G g+W++ ++  g+ R++k+c++rw
  Niben101Scf04684g03016.1 14 KGAWTKEEDHRLVNYIRSHGEGCWRSLPKAAGLQRCGKSCRLRW 57
                              79****************************************** PP
2Myb_DNA-binding25.72.8e-0856792347
                              -HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                              +W+ Ia +++ gRt++++k++w+++
  Niben101Scf04684g03016.1 56 RWSVIAGRLP-GRTDNEIKNYWNTH 79
                              4*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-17556IPR009057Homeodomain-like
PROSITE profilePS5129417.922965IPR017930Myb domain
SMARTSM007176.2E-131382IPR001005SANT/Myb domain
SuperFamilySSF466895.99E-171481IPR009057Homeodomain-like
PfamPF002492.1E-131457IPR001005SANT/Myb domain
CDDcd001677.54E-111680No hitNo description
Gene3DG3DSA:1.10.10.605.0E-125781IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRSPCCEKT HTNKGAWTKE EDHRLVNYIR SHGEGCWRSL PKAAGLQRCG KSCRLRWSVI  60
AGRLPGRTDN EIKNYWNTHI KRKLISRGLD PHTHRPLNAA TAIATATSTS TATATENICL  120
DFRNTSVAAT PLSLNDQNPT NYSSSLEEET KCSSSTTEER PPPLEPAAAL VAATEKSSGE  180
VMINLELSIG LPFQAMAAQR QPTTAAPVAA TSLVEKAVCL CWQIGSQSGQ QFCGKCQTTN  240
GFYRYC
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772294.11e-148PREDICTED: myb-related protein 330-like
RefseqXP_016495904.11e-148PREDICTED: myb-related protein 330-like
SwissprotP813952e-77MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A1S4C4A41e-146A0A1S4C4A4_TOBAC; myb-related protein 330-like
TrEMBLA0A1U7WCB11e-146A0A1U7WCB1_NICSY; myb-related protein 330-like
STRINGXP_009772294.11e-147(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-55myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]