PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04686g02002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 256aa MW: 28751.9 Da PI: 8.3957

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04686g02002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	7.9e-12	56	102	3	53
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++h+e+ErrRR+riN +++Lr llP+ k +Ka+ L +Av++ ++ Niben101Scf04686g02002.1 56 KSHSEAERRRRKRINGHLATLRNLLPNT----IKQTDKASLLAEAVRCARE 102 69***********************8....578*********97655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.672	53	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-13	56	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-9	56	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.64E-10	56	105	No hit	No description
SuperFamily	SSF47459	1.96E-12	57	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-10	59	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	2.9E-6	166	234	No hit	No description
Gene3D	G3DSA:3.30.70.260	7.5E-7	166	234	No hit	No description
CDD	cd04873	0.00255	166	231	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MINHSFPSFY ELGGCSDSYN FLHGIINSSP ELFNVENSSV VAPRSMAEAK AIAANKSHSE 60 AERRRRKRIN GHLATLRNLL PNTIKQTDKA SLLAEAVRCA RELKKTTSEL GTTMSEDDNN 120 TDDFMNYMGS NDQTTMKKFM FPSESDELNL SYCNSNNSGT LLIKATICCE DRPEIMMDLR 180 RALSTVQGKI IRAEMATVGG RIKCILWVQM LENGCREEGL GQLRRALKLV MDKANFLAQN 240 MGQDLLGNKR PRLYHC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009773083.1	0.0	PREDICTED: transcription factor bHLH30-like isoform X1
TrEMBL	A0A1U7W3A7	0.0	A0A1U7W3A7_NICSY; transcription factor bHLH30-like isoform X1
STRING	XP_009773083.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7283	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	3e-35	bHLH family protein