PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04688g01014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 350aa    MW: 40226.8 Da    PI: 8.7795
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04688g01014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05190209120
                               EEETTTTEEESSHHHHHHHH CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                               + C +C+k+F+r  n++ H+
  Niben101Scf04688g01014.1 190 FACDICNKTFNRYNNMQMHM 209
                               78*****************9 PP
2zf-C2H216.62.2e-05274296123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C +Cgk+F  k + ++H +++
  Niben101Scf04688g01014.1 274 FSCRKCGKTFAVKGDWRTHEKNC 296
                               89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-5181213No hitNo description
PfamPF139121.2E-4190209IPR007087Zinc finger, C2H2
SMARTSM003550.1190212IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-5190209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.762190217IPR007087Zinc finger, C2H2
PROSITE patternPS000280192212IPR007087Zinc finger, C2H2
SMARTSM00355190237269IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.68E-5259294No hitNo description
Gene3DG3DSA:3.30.160.603.8E-4261294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808274294IPR007087Zinc finger, C2H2
SMARTSM0035532274294IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGIRNNYSHI VQDMDLCFQA PNFIEWLKPS SNSSPSSPSP SSSSSSSSST ITQPQLLIHH  60
EATNPMIFLK LPLLYNPQEI QDMNINQATQ CLPLLNKLTD PKTERKEQDI GERRKECCEV  120
KEEKMEKVTV SLHIGLPDSC DVKEKLPFSF KQEEENREKL SSKIKGCNFN RESRFWIPTP  180
AQILVGPMQF ACDICNKTFN RYNNMQMHMW GHGSEYRKGP ESLRGTQPTA MLRLPCYCCA  240
QGCKNNINHP RAKPLKDFRT LQTHYKRKHG TKAFSCRKCG KTFAVKGDWR THEKNCGKLW  300
YCICGSDFKH KRSLKDHIRS FGNGHSPHPS LNNDYFNKEC TSDDEVNLTN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795232.10.0PREDICTED: protein TRANSPARENT TESTA 1
RefseqXP_016484426.10.0PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD11e-122ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A1S4B6C30.0A0A1S4B6C3_TOBAC; zinc finger protein WIP3-like
TrEMBLA0A1U7XT400.0A0A1U7XT40_NICSY; protein TRANSPARENT TESTA 1
STRINGXP_009795232.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-117WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]