PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04690g02008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GeBP

Protein Properties

Length: 415aa MW: 46145.2 Da PI: 6.0779

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04690g02008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	102.9	2.6e-32	164	256	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdq 86 ++rlws+eD++++L+G+ +fka++g++p + d++af++f+k++++++vsksq++ K+rrLKkKf ++ k ++p+fsk+hd Niben101Scf04690g02008.1 164 PSRLWSDEDQLAILKGMAEFKAQKGSEPNAtDMSAFHDFIKGKLQVEVSKSQVTAKLRRLKKKFLTNLKI---SNDPVFSKPHDY 245 68**********************99988**********************************9...99****** PP DUF573 87 kifelskkiWg 97 +fe+s+kiWg Niben101Scf04690g02008.1 246 LMFEFSEKIWG 256 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	8.2E-28	165	256	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MAPKSKSRLV DQPPSASSSE EQDPQQAEES QEEEEESGEE ETDDEEEPNT APPLEKKPAS 60 HKPLQTPQNK LQSSSSESGT EDGSGSDSDS ESGQSQPSPS ASDFTVKPSV PAAKSPSKPL 120 SKRPQETQQQ QAQKEKHSRP NKKPKISEED SKVSDEKKSA ATTPSRLWSD EDQLAILKGM 180 AEFKAQKGSE PNATDMSAFH DFIKGKLQVE VSKSQVTAKL RRLKKKFLTN LKISNDPVFS 240 KPHDYLMFEF SEKIWGDAGT SNTNGVNEIV NNGTNGKAKK IVDVVKRSTA EPKKSAKVST 300 LTKPKDDEKP KEDEKRTSVK EVDKEDVVVK GDDRQDFRSK YPNLAASFSF PAMSSIFPNG 360 IDIFKENMSL IASDKAKVLE EKWKKLHDNE NDLMLKRLDL IREHYKLVVD ARRGN

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MAPKSKSRLV DQPPSASSSE EQDPQQAEES QEEEEESGEE ETDDEEEPNT APPLEKKPAS  60
HKPLQTPQNK LQSSSSESGT EDGSGSDSDS ESGQSQPSPS ASDFTVKPSV PAAKSPSKPL  120
SKRPQETQQQ QAQKEKHSRP NKKPKISEED SKVSDEKKSA ATTPSRLWSD EDQLAILKGM  180
AEFKAQKGSE PNATDMSAFH DFIKGKLQVE VSKSQVTAKL RRLKKKFLTN LKISNDPVFS  240
KPHDYLMFEF SEKIWGDAGT SNTNGVNEIV NNGTNGKAKK IVDVVKRSTA EPKKSAKVST  300
LTKPKDDEKP KEDEKRTSVK EVDKEDVVVK GDDRQDFRSK YPNLAASFSF PAMSSIFPNG  360
IDIFKENMSL IASDKAKVLE EKWKKLHDNE NDLMLKRLDL IREHYKLVVD ARRGN

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269\|PubMed:12028578}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009777843.1	0.0	PREDICTED: mediator-associated protein 1-like
Refseq	XP_016481909.1	0.0	PREDICTED: mediator-associated protein 1-like
Swissprot	Q94IK2	1e-130	STK_SOLTU; STOREKEEPER protein
TrEMBL	A0A1S4AZB4	0.0	A0A1S4AZB4_TOBAC; mediator-associated protein 1-like
TrEMBL	A0A1U7WGR3	0.0	A0A1U7WGR3_NICSY; mediator-associated protein 1-like
STRING	XP_009777843.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2369	20	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	6e-20	DNA-binding storekeeper protein-related transcriptional regulator