PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04690g02040.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 191aa MW: 22342.3 Da PI: 11.3352

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04690g02040.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47.5	2.3e-15	67	108	1	42
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 k+ien++ rq t+skR+ i KKA+EL vLCd+ + +fs+ Niben101Scf04690g02040.1 67 KKIENSTSRQQTYSKRKDSIVKKANELAVLCDTCCSFNVFSN 108 68******************************9888877776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.9E-14	59	118	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	20.128	59	109	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.01E-17	59	109	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-11	61	81	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-13	68	108	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-11	81	96	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
LPEVRLIPKG LFPLLRRVIT RLTNKVTAHR ILFINCKVAV IRRRTTAHLT SSSSLHPFMG 60 RNKLAMKKIE NSTSRQQTYS KRKDSIVKKA NELAVLCDTC CSFNVFSNSV EDIMLRVVNW 120 PGNCTGGWCF PYSHEEKLNK LNQRLREARE NIRQNSWVVK FSREMKMSRW LRSTQRMQLM 180 DLHLQILIGI Q

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016439162.1	2e-36	PREDICTED: agamous-like MADS-box protein AGL66 isoform X1
TrEMBL	A0A1S3XHI9	5e-35	A0A1S3XHI9_TOBAC; agamous-like MADS-box protein AGL66 isoform X1
STRING	XP_009776411.1	9e-34	(Nicotiana sylvestris)
STRING	XP_009623377.1	2e-34	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5292	18	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.2	2e-13	AGAMOUS-like 16