PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04716g00013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 195aa    MW: 22416.9 Da    PI: 7.1432
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04716g00013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP36.61.6e-11391423105
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasn 84 
                               g+kdrhsk++  +g+Rd+   l  +c   fF++   L   ++sk ++WLl + k++ +el+ ++ +++s     +       ++ 
  Niben101Scf04716g00013.1  39 GGKDRHSKVCRIRGLRDKK--LGFLCLLHFFKI--DLDIGQPSKVVDWLLSATKHERDELPPLQIPPKSYNqfhQ---IDDDDQ- 115
                               79***************96..889********6..79**************************888883322221...111111. PP

                       TCP  85 sssg.........kaaksaakskksqksaa 105
                                            k  +++++++++++s++
  Niben101Scf04716g00013.1 116 ---YfdsslieisKGITTTNEQENQESSQS 142
                               ...022234445333333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-940132IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MKPEGTNNVQ FSRTLSSSRQ HSWTSFNNPR IVHVSRSFGG KDRHSKVCRI RGLRDKKLGF  60
LCLLHFFKID LDIGQPSKVV DWLLSATKHE RDELPPLQIP PKSYNQFHQI DDDDQYFDSS  120
LIEISKGITT TNEQENQESS QSSFLGMLNN PNPMPFNSYY YSEPNTFSTG IEEYSTNIQG  180
ITTTKGKSRD IENYL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018633676.11e-62PREDICTED: transcription factor TCP5-like
TrEMBLA0A1S3YB685e-61A0A1S3YB68_TOBAC; transcription factor TCP5-like
STRINGXP_009627677.13e-84(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08070.11e-26TCP domain protein 17