PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04740g01004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 217aa MW: 24436 Da PI: 4.8431

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04740g01004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	27.9	5.1e-09	191	215	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r+rWt+ L +rFve+v++LGG++ Niben101Scf04740g01004.1 191 KTRIRWTQHLNDRFVECVNRLGGAD 215 68*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.9E-7	189	216	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MSIQRAEQTH AYNSEFAADY NIEFQQNIDQ QKSTSCLEFC FQPGTSAENC YQQISWPNTD 60 SSSTTIISRI GSPPSAFFAT ERLIQYEYQD NSCQLSKYND PQLPSYPQCD FPKISMPSFI 120 RSQLSSSQPL GPEGAYGNPF CNLSEKERLV ILKSKLLGEF DSMPVFHENQ DYGITNNVNN 180 SGCSGGSLSN KTRIRWTQHL NDRFVECVNR LGGADSK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009765656.1	1e-129	PREDICTED: uncharacterized protein LOC104217181 isoform X2
TrEMBL	A0A1U7VL19	1e-128	A0A1U7VL19_NICSY; uncharacterized protein LOC104217181 isoform X2
STRING	XP_009765655.1	1e-127	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2491	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-09	G2-like family protein