PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04741g04002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

STAT

Protein Properties

Length: 454aa MW: 50849.3 Da PI: 4.9731

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04741g04002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	190.7	1.7e-59	165	284	1	120
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfri 85 ldv+l++ +++p++ +vevvasL+yad+ ++vek+ d+eapLL++ydG+e++s+drp+k++ GrasfklkisqLsskcdnrLf+i Niben101Scf04741g04002.1 165 LDVTLMDNFSRPITEEVEVVASLVYADDEAPVEKPVDDEAPLLTNYDGIEYASSDRPSKVISGRASFKLKISQLSSKCDNRLFCI 249 89********************************************************************************* PP STAT 86 kfeipklkkypfleavskpirCisrsrntrssslt 120 +f ipk+ +ypfle++s+pirCisr+rntr++sl+ Niben101Scf04741g04002.1 250 RFVIPKMGNYPFLEVFSRPIRCISRNRNTRAASLM 284 ****************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF49899	9.31E-9	22	126	IPR013320	Concanavalin A-like lectin/glucanase domain
Gene3D	G3DSA:2.60.120.200	1.8E-5	27	149	IPR013320	Concanavalin A-like lectin/glucanase domain

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MGIQDYGFLE DLQVEFKDYD CTNGIFLCFW FYLNKASTLP STILLQNHSD VTSHAPFLLL 60 DEKRRLLLYP LLTSWREDVY ATSESEFSTK KWVHVGCEVT KNLLRLYLDG EIVGEKSLTS 120 LLNNDSVSDS SEISFPCISG KGSQLDGYVY SAELLPASCR RNFSLDVTLM DNFSRPITEE 180 VEVVASLVYA DDEAPVEKPV DDEAPLLTNY DGIEYASSDR PSKVISGRAS FKLKISQLSS 240 KCDNRLFCIR FVIPKMGNYP FLEVFSRPIR CISRNRNTRA ASLMLRKSSL GIHLLNGSQS 300 PILEDGSSDL PCIVREAKQS PSSKRVKLGQ EKLCANFKDG FVLQQANGES KSHSRISEDN 360 YAYLNSLVAR PVSHGGAQNF SSDSENSETT NSGIDDFPSN RDPISDVDVF KYCLGDLNER 420 CLLLKEMAMS AKEEELATFA ERVSLFSGCS HHRY

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MGIQDYGFLE DLQVEFKDYD CTNGIFLCFW FYLNKASTLP STILLQNHSD VTSHAPFLLL  60
DEKRRLLLYP LLTSWREDVY ATSESEFSTK KWVHVGCEVT KNLLRLYLDG EIVGEKSLTS  120
LLNNDSVSDS SEISFPCISG KGSQLDGYVY SAELLPASCR RNFSLDVTLM DNFSRPITEE  180
VEVVASLVYA DDEAPVEKPV DDEAPLLTNY DGIEYASSDR PSKVISGRAS FKLKISQLSS  240
KCDNRLFCIR FVIPKMGNYP FLEVFSRPIR CISRNRNTRA ASLMLRKSSL GIHLLNGSQS  300
PILEDGSSDL PCIVREAKQS PSSKRVKLGQ EKLCANFKDG FVLQQANGES KSHSRISEDN  360
YAYLNSLVAR PVSHGGAQNF SSDSENSETT NSGIDDFPSN RDPISDVDVF KYCLGDLNER  420
CLLLKEMAMS AKEEELATFA ERVSLFSGCS HHRY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769180.1	0.0	PREDICTED: uncharacterized protein LOC104220071
TrEMBL	A0A1U7W4H6	0.0	A0A1U7W4H6_NICSY; uncharacterized protein LOC104220071
STRING	XP_009769180.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9394	23	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	9e-75	SH2 domain protein B