PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04742g03020.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YC

Protein Properties

Length: 281aa MW: 31159.7 Da PI: 4.9871

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04742g03020.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	61.1	2.3e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + ++ +t++ +++++++ ++fdfl d+v r Niben101Scf04742g03020.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKKGAKTMNSFHLKQCIQSFNVFDFLKDVVSR 86 5789**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.3E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	4.74E-20	3	88	IPR009072	Histone-fold
Pfam	PF00808	4.2E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MRKRLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLKKGAK 60 TMNSFHLKQC IQSFNVFDFL KDVVSRVPDL GGSDGGAESA TKRRKVVEED DHDSDDDIKR 120 SSRMHETAHT TSSGRGRGRG RGRGRGRGAR AVERGDSNVH SDKLEDAADV SNQNNEKQKQ 180 NGERMDYVAE PADSKNISAG KCPEVPARNF DLNIDLNESV ESTAIPAEAP STSKMAPPEV 240 KHEEIPGWSL SEMEKMAIDP IQLANLSRGL DEEEEDYDEE G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-22	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	146	RGRGRGRGRGR
2	138	147	RGRGRGRGRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019236573.1	1e-171	PREDICTED: dr1-associated corepressor-like isoform X1
TrEMBL	A0A1J6KDL3	1e-170	A0A1J6KDL3_NICAT; Uncharacterized protein
STRING	XP_009797323.1	1e-168	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7555	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	7e-62	NF-YC family protein