PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04748g01014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 244aa    MW: 28247 Da    PI: 7.0096
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04748g01014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.9e-151194299
                              EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                        B3  2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                              fk     + +k+g l +p  f+ ++ +g k+   +  +  ++g++W vk+  ++++    l++GW +F++++ L+ gD++vF+++g+
  Niben101Scf04748g01014.1 11 FKPI--QSDFKQG-LKIPVGFL-KYlMGYKN---EYAILRKDGKKWLVKV--NGRR----LQEGWGKFAEEQSLELGDMLVFRHEGN 84
                              5555..5556666.********.66544433...5788899*********..8888....*************************99 PP

                              SEE..EEEEE-S CS
                        B3 88 sefelvvkvfrk 99
                              +ef   v++f++
  Niben101Scf04748g01014.1 85 MEF--EVTIFDS 94
                              999..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-21397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-20497IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.407795IPR003340B3 DNA binding domain
CDDcd100177.34E-16893No hitNo description
SMARTSM010192.9E-151095IPR003340B3 DNA binding domain
PfamPF023622.9E-121194IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKITPAKPHF FKPIQSDFKQ GLKIPVGFLK YLMGYKNEYA ILRKDGKKWL VKVNGRRLQE  60
GWGKFAEEQS LELGDMLVFR HEGNMEFEVT IFDSSHCDRE YAEYLLDEEE ANKVEFKVGD  120
GRKTKFWQDI WHGNSPIKGS FPDLHRITYS SNALISDFRL DHGWLINFRR NLNDWEVDRH  180
LSLLDFIHRS SCSSSPTSDC LIWTANWKGT FSVKSCYAIL TQSNPLEYSL ALETHLEGAG  240
PSQG
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-19B3 family protein