PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04748g02016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 350aa    MW: 39910.7 Da    PI: 8.2158
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04748g02016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.99e-141193295
                              EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                        B3  2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                              fk       +k+g l +p  f+ ++ + +   +++ ++  + +++W vk+  ++++    l++GW++F+++++L+ gD++vF ++g+
  Niben101Scf04748g02016.1 11 FKPV--MPDFKNG-LKIPLGFL-KYlKDQ--DHIEHVILRTGSKKWLVKV--NGQR----LEEGWEKFAEEHDLQLGDMLVFGHEGD 85
                              5555..3456666.********.663444..5678888899*********..8887....*************************** PP

                              SEE..EEE CS
                        B3 88 sefelvvk 95
                              +efe v k
  Niben101Scf04748g02016.1 86 MEFEHVPK 93
                              99987655 PP
2B343.27.3e-14911661898
                               --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                               +pk fa e+g+++++  t++++d + rsWe++l    ++g++++++ W++F+ an LkegD ++F+  + ++++  +k+++
  Niben101Scf04748g02016.1  91 VPKLFACENGLSNRK-CTIVIRD-EQRSWEFRL--YSCGGSTFIGGEWRKFCAANFLKEGDHIMFEIFS-KGEKTILKFCD 166
                               6999*99**999765.5999999.779******..999999*************************655.55555777776 PP
3B349.67.2e-16223305590
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               +++++ l+ g l +pk+fa ++g+k++++  l+++de+ rsW+++l  + ++ ++++++G ++F  +n LkegD ++F+++  s+
  Niben101Scf04748g02016.1 223 TIRPYCLTYGFLNVPKHFACANGLKPNKKCILIIRDERQRSWTLRL--SVCKTQVYIGDGLRKFIGDNCLKEGDRIMFEVVT-SG 304
                               56789999999***********************************..999999*************************765.44 PP

                               E CS
                        B3  90 f 90 
                               +
  Niben101Scf04748g02016.1 305 E 305
                               4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-16389IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-16388IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-11885No hitNo description
SMARTSM010192.3E-81089IPR003340B3 DNA binding domain
PROSITE profilePS5086310.82874170IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-1390165IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-1390165IPR015300DNA-binding pseudobarrel domain
CDDcd100175.78E-1191166No hitNo description
SMARTSM010190.001391168IPR003340B3 DNA binding domain
PfamPF023627.8E-1291166IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-17217311IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-16217311IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.165219314IPR003340B3 DNA binding domain
SMARTSM010194.0E-13220314IPR003340B3 DNA binding domain
PfamPF023629.6E-14223307IPR003340B3 DNA binding domain
CDDcd100172.19E-10232299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MKISPKKPHF FKPVMPDFKN GLKIPLGFLK YLKDQDHIEH VILRTGSKKW LVKVNGQRLE  60
EGWEKFAEEH DLQLGDMLVF GHEGDMEFEH VPKLFACENG LSNRKCTIVI RDEQRSWEFR  120
LYSCGGSTFI GGEWRKFCAA NFLKEGDHIM FEIFSKGEKT ILKFCDLRGE ASFQPEGKKT  180
NLDTERVSTQ EKPSPSIKSS NKASADAKAA AHEPFGHSKF VCTIRPYCLT YGFLNVPKHF  240
ACANGLKPNK KCILIIRDER QRSWTLRLSV CKTQVYIGDG LRKFIGDNCL KEGDRIMFEV  300
VTSGETPIWK FQVVTSGKDS NEEVNILGRV PRITEAIDNN GVDDGQENEH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018625377.11e-153PREDICTED: putative B3 domain-containing protein REM15 isoform X1
TrEMBLA0A1J6HXT21e-150A0A1J6HXT2_NICAT; Putative b3 domain-containing protein rem15
STRINGXP_009771718.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31650.12e-30B3 family protein