PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04748g03001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 75aa MW: 8655.69 Da PI: 6.5095

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04748g03001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.9	4.2e-14	2	52	40	98
ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++g++W+vk+ ++++ +++GW eF+++++L+ gD++vF+++g+++f v++f Niben101Scf04748g03001.1 2 TLDGKKWRVKV--NGHR----FEAGWAEFAEEHDLQLGDMLVFRHEGNMNF--DVSIFG 52 679******..7777....9*********************999999..888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.521	1	54	IPR003340	B3 DNA binding domain
CDD	cd10017	1.32E-13	1	51	No hit	No description
SuperFamily	SSF101936	2.16E-15	2	54	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	6.2E-10	2	51	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.0E-15	3	54	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence Send to blast
MTLDGKKWRV KVNGHRFEAG WAEFAEEHDL QLGDMLVFRH EGNMNFDVSI FGSSHYERIC 60 GVYARRRGGG DPQEI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009612440.1	1e-25	PREDICTED: B3 domain-containing protein REM10-like isoform X2
Refseq	XP_016494916.1	1e-25	PREDICTED: B3 domain-containing protein REM10-like isoform X1
Refseq	XP_016494917.1	1e-25	PREDICTED: B3 domain-containing protein REM10-like isoform X2
Swissprot	O81778	7e-14	REM9_ARATH; B3 domain-containing protein REM9
TrEMBL	A0A1J6IAT2	2e-25	A0A1J6IAT2_NICAT; B3 domain-containing protein rem10 (Fragment)
TrEMBL	A0A1S4C180	3e-24	A0A1S4C180_TOBAC; B3 domain-containing protein REM10-like isoform X1
TrEMBL	A0A1S4C193	2e-24	A0A1S4C193_TOBAC; B3 domain-containing protein REM10-like isoform X2
STRING	XP_009612433.1	5e-25	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA322	15	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	3e-16	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525] Wang S, et al. Chloroplast RNA-Binding Protein RBD1 Promotes Chilling Tolerance through 23S rRNA Processing in Arabidopsis. PLoS Genet., 2016. 12(5): p. e1006027 [PMID:27138552]