PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04748g03007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 215aa MW: 24623.3 Da PI: 9.6578

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04748g03007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.8	6.3e-16	13	94	4	98
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +k+g l +p f+ ++ +g + + + ++g++W vkl + y +++GW++F+++++L+ gD++vF+++g++e Niben101Scf04748g03007.1 13 PI--QPGFKNG-LKIPVGFL-KYlKGHE--HNEYATLRRDGKKWLVKL--ND----YRFEAGWSDFAEQHDLQLGDMLVFRHEGNME 87 44..4556665.******.6645553..335666778*****..55....55***********************9999 PP E..EEEEE- CS B3 90 felvvkvfr 98 f v +f+ Niben101Scf04748g03007.1 88 F--EVVIFD 94 9..777776 PP
2	B3	41.7	2.1e-13	146	202	29	87
-..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + ++ +++l+de rsW+v+l + + ++ +t+GW +F a+gL++gD F+l+++ Niben101Scf04748g03007.1 146 N--RKCEMILKDEAQRSWSVRLGPQTDRHHFGITSGWAKFRAAKGLQVGDAYKFELIKN 202 3..4458*************445555559999*******************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.0E-23	3	96	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.28E-20	4	95	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.746	7	96	IPR003340	B3 DNA binding domain
CDD	cd10017	3.55E-19	8	94	No hit	No description
SMART	SM01019	2.6E-15	10	96	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-12	18	94	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.0E-14	121	210	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.02E-14	121	210	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.2E-6	125	214	IPR003340	B3 DNA binding domain
CDD	cd10017	2.49E-11	143	203	No hit	No description
Pfam	PF02362	1.3E-11	146	203	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.475	150	213	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MEVPPKKPHF FKPIQPGFKN GLKIPVGFLK YLKGHEHNEY ATLRRDGKKW LVKLNDYRFE 60 AGWSDFAEQH DLQLGDMLVF RHEGNMEFEV VIFDSTTDIT KKPSNTIPLN AQACTPTSGD 120 NDLPYFTSTI KPYCISKPVL SSGLMNRKCE MILKDEAQRS WSVRLGPQTD RHHFGITSGW 180 AKFRAAKGLQ VGDAYKFELI KNGKIPIAHF HYISH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801949.1	1e-129	PREDICTED: B3 domain-containing protein REM14-like
Refseq	XP_016464850.1	1e-129	PREDICTED: B3 domain-containing protein REM14-like
TrEMBL	A0A1S3ZJZ8	1e-128	A0A1S3ZJZ8_TOBAC; B3 domain-containing protein REM14-like
TrEMBL	A0A1U7YRV2	1e-128	A0A1U7YRV2_NICSY; B3 domain-containing protein REM14-like
STRING	XP_009801949.1	1e-129	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA322	15	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31640.1	1e-30	B3 family protein