PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04748g03008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 392aa    MW: 45388.2 Da    PI: 9.4
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04748g03008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.84.7e-1444129199
                               EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                               ffk +   + +k++ l +p  f+ ++ +  +  +++  +  + g+ W vk+  ++++    +++GW +F+++++L+ gD +vF++
  Niben101Scf04748g03008.1  44 FFKPM--LSGFKHH-LKIPVGFL-KYlK--EYDHIEHAILRRAGKIWLVKV--NGRR----FEAGWADFAQQHDLQLGDLLVFRH 116
                               78888..8889998.********.6732..44677889999**********..8887....9*********************** PP

                               -SSSEE..EEEEE-S CS
                        B3  85 dgrsefelvvkvfrk 99 
                               +g++ef   v +f++
  Niben101Scf04748g03008.1 117 EGNMEF--EVIIFDS 129
                               *99999..7777775 PP
2B344.82.3e-14175263496
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                +++++ l++g l++pk+fa ++g+ ++ +  l+++de+ rsW+++l  + +++++ +++ W eF  an++k+g  ++F+++  +
  Niben101Scf04748g03008.1 175 CTVKPYCLTNGFLRIPKQFALANGLTNK-KCGLIIRDERQRSWDLRL--TTYGSQVNMGGRWGEFRAANDIKAGNKIMFEVVT-N 255
                               5678999****************77654.347999************..999999*************************876.4 PP

                               EE..EEEE CS
                        B3  89 efelvvkv 96 
                               ++++  k+
  Niben101Scf04748g03008.1 256 GEQPIWKF 263
                               44456555 PP
3B343.27e-14295378392
                               EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                        B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                 +++++ l++++l++p++fa +  ++k++  +l+++de+ rsW ++l  r  + +   ++GW eF + n +kegD ++F+++ +
  Niben101Scf04748g03008.1 295 VCTVKPYCLSNDLLCIPRQFAHAL-INKKC--DLIIRDERQRSWILRL--RSFGTGACVRGGWHEFRDTNCIKEGDRILFEVVTN 374
                               567889**************9444.34445..8***************..888888999**********************8764 PP

                               SEE.. CS
                        B3  88 sefel 92 
                                 +++
  Niben101Scf04748g03008.1 375 -AEKP 378
                               .4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-1936130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-1938130IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.05541130IPR003340B3 DNA binding domain
CDDcd100172.83E-1542128No hitNo description
PfamPF023621.8E-1044128IPR003340B3 DNA binding domain
SMARTSM010194.5E-1444130IPR003340B3 DNA binding domain
SuperFamilySSF1019361.41E-15170263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-15170263IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.039172266IPR003340B3 DNA binding domain
SMARTSM010196.7E-15172267IPR003340B3 DNA binding domain
PfamPF023625.2E-12174265IPR003340B3 DNA binding domain
CDDcd100173.92E-10178251No hitNo description
SuperFamilySSF1019363.73E-16291387IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-15292382IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.533293385IPR003340B3 DNA binding domain
SMARTSM010194.1E-11293386IPR003340B3 DNA binding domain
PfamPF023622.3E-12294383IPR003340B3 DNA binding domain
CDDcd100173.72E-7299370No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MKANGVQVGN TYKFELINNS TRPIAHNHII VLAAMKIPPK KPHFFKPMLS GFKHHLKIPV  60
GFLKYLKEYD HIEHAILRRA GKIWLVKVNG RRFEAGWADF AQQHDLQLGD LLVFRHEGNM  120
EFEVIIFDSS QYDREYAEYL QQEEGEVHIV EEAFKNFEVK DGATHNPVGQ SYFICTVKPY  180
CLTNGFLRIP KQFALANGLT NKKCGLIIRD ERQRSWDLRL TTYGSQVNMG GRWGEFRAAN  240
DIKAGNKIMF EVVTNGEQPI WKFHDKPKPS IKSSSMPFTH TEPATHKPFG YSYFVCTVKP  300
YCLSNDLLCI PRQFAHALIN KKCDLIIRDE RQRSWILRLR SFGTGACVRG GWHEFRDTNC  360
IKEGDRILFE VVTNAEKPIW QFHRNISGEN IQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261611.10.0PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A314LA480.0A0A314LA48_NICAT; B3 domain-containing protein rem10
STRINGXP_009612433.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-40B3 family protein