PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04763g01014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 463aa    MW: 51527.5 Da    PI: 8.8141
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04763g01014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.8e-31225280359
                               -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               DgynWrKYGqK+vk se+prsYY+Ct+ +C+vkkkvers  d++++eitY+g+Hnhe
  Niben101Scf04763g01014.1 225 DGYNWRKYGQKKVKASECPRSYYKCTHLKCSVKKKVERSV-DGHITEITYNGRHNHE 280
                               9***************************************.***************7 PP
2WRKY99.71.8e-31394452159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vkg+++prsYYrCt++gC+v+k+ver+++d k v++tYe +Hnh+
  Niben101Scf04763g01014.1 394 LDDGYKWRKYGQKVVKGNQHPRSYYRCTYPGCNVRKQVERASTDAKNVITTYERKHNHD 452
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-27220282IPR003657WRKY domain
SuperFamilySSF1182901.44E-23222282IPR003657WRKY domain
SMARTSM007743.2E-32223281IPR003657WRKY domain
PROSITE profilePS5081122.584225282IPR003657WRKY domain
PfamPF031061.9E-22225280IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-34380454IPR003657WRKY domain
SuperFamilySSF1182902.62E-28386454IPR003657WRKY domain
PROSITE profilePS5081134.704389454IPR003657WRKY domain
SMARTSM007743.4E-36394453IPR003657WRKY domain
PfamPF031068.3E-25395452IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGETGGASAM SFPALTIPPR PSFESFLSNL PSFSPGPMSL VSSFFSDQSP DSSDYPSFSQ  60
LLAGAMTSPL AKQDNSGEGS QKNSGYKQNR PMGLVLAQSP LFMMSPGLSP SGLLNSPGFL  120
SPLQSPFGMS HQQALAHVTA QAAFSNSYMQ MQAEDQCSSQ VASAEALGHE LTNELKETSL  180
QLKEPSQTRM YSEPSDKQGK KFELLEFSQT ENNPSFITVE KPACDGYNWR KYGQKKVKAS  240
ECPRSYYKCT HLKCSVKKKV ERSVDGHITE ITYNGRHNHE LPQPSKQRKD GSALNDTNCS  300
EVRPHIQTHD WTVINSSVGS SVSRSDRFPT QMASEHLVKR EHDETKNILV AVDEGHDEPN  360
AKRTKTAVET LASSHSTVAE SKIVLQTRSE VDFLDDGYKW RKYGQKVVKG NQHPRSYYRC  420
TYPGCNVRKQ VERASTDAKN VITTYERKHN HDIPTVRNRN SRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-34225454877Probable WRKY transcription factor 4
2lex_A6e-34225454877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768533.10.0PREDICTED: probable WRKY transcription factor 3
RefseqXP_016436720.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9XI901e-121WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A1J6KND90.0A0A1J6KND9_NICAT; Putative wrky transcription factor 3
STRINGXP_009768533.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-101WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]