PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04766g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 270aa MW: 30628.8 Da PI: 9.5825

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04766g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.5	1.3e-28	187	243	4	59
SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 4 gynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++WrKYGqK++kgs fpr+YYrC+++ +C +kk++e+s +dp+++++ Y+geHnh+ Niben101Scf04766g00001.1 187 TWAWRKYGQKPIKGSLFPRNYYRCSTSkDCDAKKHIEKSPRDPNLFIVAYSGEHNHP 243 599*******************9988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.8E-28	170	245	IPR003657	WRKY domain
PROSITE profile	PS50811	29.172	179	245	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-23	183	245	IPR003657	WRKY domain
SMART	SM00774	5.2E-30	184	244	IPR003657	WRKY domain
Pfam	PF03106	5.9E-23	188	243	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MGDNNWDLGA VVRSYNIRPS HETNMVEVPR LGLESLTLEK DDDWNFFHSL LDDDDIMTFK 60 GLTDIFSRDN QKPDAPQPSF ISVDEVKNDL NDQQLLLQPI QLPAQQTQQI PPPPPAATAA 120 AAARVPVAAP QQVIPQQLNP RPVLKRAKVR PTITVPVRNP IIQIRRRKNQ PEKTVHEVSQ 180 EELIEFTWAW RKYGQKPIKG SLFPRNYYRC STSKDCDAKK HIEKSPRDPN LFIVAYSGEH 240 NHPPPANRCT LSDSTNSKPK SKKLPKGINI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-16	175	246	8	78	Probable WRKY transcription factor 4
2lex_A	4e-16	175	246	8	78	Probable WRKY transcription factor 4
5w3x_B	4e-16	188	246	20	80	Disease resistance protein RRS1
5w3x_D	4e-16	188	246	20	80	Disease resistance protein RRS1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778379.1	1e-140	PREDICTED: probable WRKY transcription factor 27
Refseq	XP_016506104.1	1e-140	PREDICTED: probable WRKY transcription factor 27
TrEMBL	A0A1S4CYM6	1e-138	A0A1S4CYM6_TOBAC; probable WRKY transcription factor 27
TrEMBL	A0A1U7WUK4	1e-138	A0A1U7WUK4_NICSY; probable WRKY transcription factor 27
STRING	XP_009778379.1	1e-139	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3668	13	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	2e-35	WRKY DNA-binding protein 27