PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04785g01033.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 253aa    MW: 27726.8 Da    PI: 6.8283
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04785g01033.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601231.6e-38391401101
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +C aCk+lrrkC ++C++ap++ ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v++il+lq
  Niben101Scf04785g01033.1  39 PCGACKFLRRKCISGCIFAPHYGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRHDAVVTITYEAQARLSDPVYGCVSTILALQ 123
                               7***********************9989********************************************************* PP

                    DUF260  85 qqleqlkaelallkeel 101
                               qq+++l+aela+++++l
  Niben101Scf04785g01033.1 124 QQVASLQAELAVVQTQL 140
                               ************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.55538140IPR004883Lateral organ boundaries, LOB
PfamPF031959.6E-3839137IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDEPPSDGTS ENGRKGPGKR ATRVVEPLVS AALPASTAPC GACKFLRRKC ISGCIFAPHY  60
GSDQGAARFA AVHKVFGASN VSKLLLHIPA NRRHDAVVTI TYEAQARLSD PVYGCVSTIL  120
ALQQQVASLQ AELAVVQTQL INNRYAMGNA LQTSQQQHHH HHLQQQQLHQ EHHIAILQPT  180
YSNNSSVSNN NLINNINSAN TFNSTAFHQL PDDTCATTLP NNNSPSFDPI HQEDEEEEES  240
HNNPIAFTNQ MFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-39341496118LOB family transfactor Ramosa2.1
5ly0_B3e-39341496118LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016510881.11e-137PREDICTED: LOB domain-containing protein 20-like
SwissprotQ9SRV36e-71LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A1S4DBV11e-135A0A1S4DBV1_TOBAC; LOB domain-containing protein 20-like
STRINGXP_009779769.11e-135(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-57LOB domain-containing protein 20