PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04889g00020.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 173aa    MW: 18962.5 Da    PI: 10.4879
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04889g00020.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.4e-1597141347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE+  ++ +v++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  Niben101Scf04889g00020.1  97 AWTEEEHRTFLVGVEKLGKGDWRGISRKFVTTRTPTQVASHAQKY 141
                               7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.862320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.21590146IPR017930Myb domain
SuperFamilySSF466891.5E-1791146IPR009057Homeodomain-like
SMARTSM007177.2E-1194144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-1294140IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-1794144IPR006447Myb domain, plants
CDDcd001671.25E-997142No hitNo description
PfamPF002498.3E-1397141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MRRKCSHCGK IGHNSRTCTS FKVGAISSGL RLFGVQVVDN ISSSSSSSSS SSHDIHLKKS  60
LSLDCLSSSE KTSCTNGCLS ENCLLGQAHQ HRRKGVAWTE EEHRTFLVGV EKLGKGDWRG  120
ISRKFVTTRT PTQVASHAQK YFLRLSTHHL INNKKRLAAA LDLELSLAAP TNN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773328.14e-86PREDICTED: protein REVEILLE 4-like
RefseqXP_016515921.15e-86PREDICTED: protein REVEILLE 4-like
TrEMBLA0A1S4DR611e-84A0A1S4DR61_TOBAC; protein REVEILLE 4-like
TrEMBLA0A1U7W3Z91e-84A0A1U7W3Z9_NICSY; protein REVEILLE 4-like
STRINGXP_009773328.12e-85(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33852147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-37MYB_related family protein