PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04895g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 332aa    MW: 38307.4 Da    PI: 4.2458
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04895g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.61.4e-24121422128
                       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgy 82 
                               p+G+rFhPt+ e++ +yL   v++++l+ ++  ++ +d+y   ePw++ +++++  +++  yf ++++k+++t kr +r++ +g+
  Niben101Scf04895g00003.1  12 PVGYRFHPTNREVL-RYLIGFVRDEPLPSQNElMQVADLYADkEPWQIFEAYDQenNNNTRYFITPQKKEKPTWKRVSRTVGKGT 95 
                               89**********99.9**********88877747777*997559****7433331144467************************ PP

                       NAM  83 WkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                               Wk +gk +ev++ kg+l+g  k+L +   ++ ++ ++ +W+m ey+l
  Niben101Scf04895g00003.1  96 WKPQGKGREVFDDKGRLMGYVKSLKYIpANKLSNNVNGEWLMTEYSL 142
                               ***************************656778889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-288165IPR003441NAC domain
PROSITE profilePS5100528.58111165IPR003441NAC domain
PfamPF023651.2E-1212142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEYSQAKCFS GPVGYRFHPT NREVLRYLIG FVRDEPLPSQ NELMQVADLY ADKEPWQIFE  60
AYDQENNNNT RYFITPQKKE KPTWKRVSRT VGKGTWKPQG KGREVFDDKG RLMGYVKSLK  120
YIPANKLSNN VNGEWLMTEY SLFDRYLAAR EIKNKGFVIC KIKKKGKPGD KIKGNNIDEV  180
VNDENMRDIE EFIDTVLQED VQVEDNGIRS NGIEKDDQEN NIIQYAEGDQ VRDHVLGLLD  240
SPEDTVDVND HEEYVEDCVD EGDEVQVHLL EGYIDSVLQS EDVQAEHNGM MSSNGIIAKD  300
DEENMEYQVE DNQPATFWAS AEDVDLDTLN FF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762991.10.0PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A1J6JUZ10.0A0A1J6JUZ1_NICAT; Nac domain-containing protein 43
STRINGXP_009762991.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.13e-15NAC domain containing protein 84