PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04921g01007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 191aa    MW: 22565.6 Da    PI: 8.4353
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04921g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.79.5e-16351551
                              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE..EEEEE- CS
                    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk..lyeyss 51
                              n+ +r+v +    + ++KKAeELSvLCd+e+ +i+fs++ k  +ye++s
  Niben101Scf04921g01007.1  3 NEHRRSVVLQETMEILFKKAEELSVLCDIEIGIIVFSPDKKdaVYEWPS 51
                              78999********************************9865559**996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0048150IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.867151IPR002100Transcription factor, MADS-box
PfamPF003191.9E-12343IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-15384IPR002100Transcription factor, MADS-box
CDDcd001201.23E-12351No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVNEHRRSVV LQETMEILFK KAEELSVLCD IEIGIIVFSP DKKDAVYEWP SRDKFRQILM  60
RYLDKPLVER LKKLTTNEMF LMKEMDDKMK KIDQQKTEEK EMEQLFSQLY LGEKTVFDLD  120
KRQLIGVRNL AIKAKEKAVK RRIQLKLQDQ HLRLPVDDPL ALRLAPLNVQ DLRLELPVDD  180
PLALRLAPPE N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233245.11e-119PREDICTED: MADS-box transcription factor 31-like
TrEMBLA0A1J6KDN71e-117A0A1J6KDN7_NICAT; Uncharacterized protein
STRINGXP_009760062.11e-113(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.12e-10AGAMOUS-like 92