PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04932g00017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 170aa    MW: 19524.2 Da    PI: 10.3718
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04932g00017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000192648123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ykC+ C++ F++   L  H+++H
  Niben101Scf04932g00017.1 26 YKCSFCKREFRSAQVLGGHMNVH 48
                              9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.88E-72252No hitNo description
Gene3DG3DSA:3.30.160.601.8E-42351IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1772653IPR007087Zinc finger, C2H2
SMARTSM003550.00932648IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-62649IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MDKMKFKENT HIEVRDSASI WPERDYKCSF CKREFRSAQV LGGHMNVHRR DRAKLRLLHY  60
SPSPSCDNIN SSPKNPNHNI SISSSSSSSS PRFNFTGSYL KGDIAKSTLR KKVSLGVKPP  120
ADFVKRSNEN RVWKKREFVT LDFNMGLLQT HTKEGNVDMD LDLELRLGYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-112148229superman protein
2l1o_A1e-112148229Transcriptional regulator SUPERMAN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788060.11e-108PREDICTED: transcriptional regulator SUPERMAN-like
RefseqXP_016486680.11e-108PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A1S4BCM51e-106A0A1S4BCM5_TOBAC; transcriptional regulator SUPERMAN-like
TrEMBLA0A1U7XNJ21e-106A0A1U7XNJ2_NICSY; transcriptional regulator SUPERMAN-like
STRINGXP_009788060.11e-107(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.16e-19C2H2 family protein