PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04934g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 207aa    MW: 24389.5 Da    PI: 9.9049
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04934g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF565.1e-18347549
                              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              n+ +r+v +  R ++++KKAeELSvLCd+e+ +i+fs++ k  ey
  Niben101Scf04934g00005.1  3 NEHRRSVVLQERIETLFKKAEELSVLCDVEIGIIVFSPDKKNAEY 47
                              899************************************998888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.236151IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-6150IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-17283IPR002100Transcription factor, MADS-box
CDDcd001202.82E-15251No hitNo description
PfamPF003194.2E-15244IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-71328IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-72849IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MANEHRRSVV LQERIETLFK KAEELSVLCD VEIGIIVFSP DKKNAEYVWP SRDKFKQLMM  60
RYLDKPRVER LKKLTTNEMF LRKEMDAKMK KIDQQKTEEK EMEQLFSQLY LGEKTVFDLD  120
KRQIIGVRNL AIKAKEKAVK RRIQLKYLQD QRLSLPHRVA PVNVEDQRLQ LSVDDPLALR  180
LAPLNVQDQP LQLLDDPLAL RLAPPEN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760062.11e-131PREDICTED: MADS-box transcription factor 31-like
TrEMBLA0A1U7UVK31e-130A0A1U7UVK3_NICSY; MADS-box transcription factor 31-like
STRINGXP_009760062.11e-131(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.25e-14M-type_MADS family protein