PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04950g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26579.1 Da    PI: 5.4716
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04950g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.63.4e-28959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl++yss
  Niben101Scf04950g01005.1  9 KKIDNVTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSS 59
                              68***********************************************96 PP
2K-box50.96.7e-189217319100
                     K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                                ++a+L kei +  +++R++ Ge+L+ Ls++eLq Le+ Le +l+++ +kK + ++++i++lq+k  +l een++L++++ e
  Niben101Scf04950g01005.1  92 SDYARLTKEITQKSHQLRQMRGEELQGLSIEELQLLERSLEAGLSRVIEKKGDKIMKEINQLQEKGIQLMEENERLKQQVSE 173
                               689***************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.296161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-37160IPR002100Transcription factor, MADS-box
CDDcd002651.61E-38377No hitNo description
SuperFamilySSF554559.81E-31381IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.61487177IPR002487Transcription factor, K-box
PfamPF014866.8E-1692171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVKEKIQIKK IDNVTARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFDYSSS  60
SMKEILERHN LLSKNLHKME QPSLELQLVE DSDYARLTKE ITQKSHQLRQ MRGEELQGLS  120
IEELQLLERS LEAGLSRVIE KKGDKIMKEI NQLQEKGIQL MEENERLKQQ VSEISNNSSE  180
HPAIFVAVES ENIYYEERQS SESVNNASNS TSPLPLEDHS SDTSLKLGLP YPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19169169MEF2C
5f28_B2e-19169169MEF2C
5f28_C2e-19169169MEF2C
5f28_D2e-19169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019262559.11e-158PREDICTED: MADS-box protein JOINTLESS-like isoform X2
SwissprotQ9FUY61e-113JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A314L7G81e-157A0A314L7G8_NICAT; Mads-box protein jointless
STRINGXP_009631749.11e-153(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9382377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-115MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]