PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04950g03011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 257aa    MW: 28947.2 Da    PI: 8.3198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04950g03011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.4e-1356102354
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               ++h+e+ErrRR+riN  +++Lr llP+       K +Ka+ L +Av+++++L
  Niben101Scf04950g03011.1  56 KSHSEAERRRRKRINGHLATLRNLLPNT-----IKTDKASLLAEAVRCVREL 102
                               69*************************8.....6**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.30753102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1356112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-1056102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-1056104No hitNo description
SuperFamilySSF474591.18E-1357113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1159108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.9E-6166233No hitNo description
SuperFamilySSF550219.61E-5166233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MINHSFPSFY ELGGCSDSYN FLHGIINSSP EMFNVESSSV VSPRSMAEAK AIAANKSHSE  60
AERRRRKRIN GHLATLRNLL PNTIKTDKAS LLAEAVRCVR ELKKTTSELG ATMSEDYDDD  120
TDDFVNYMGS NDQTTMKKFM FPSESDELNL SYCNSNNAGK LLVKATICCE DRPEIMMDLR  180
RALSTVQGKI IRAEMATVGG RIKCICWVQM LENGCREEGL VQLRRALKLV MDKANFLAQN  240
MGQDLLGNKR PRLYHRC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773084.10.0PREDICTED: transcription factor bHLH30-like isoform X2
RefseqXP_016492181.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLA0A1S4BTH50.0A0A1S4BTH5_TOBAC; transcription factor bHLH30-like
TrEMBLA0A1U7WEL20.0A0A1U7WEL2_NICSY; transcription factor bHLH30-like isoform X2
STRINGXP_009605433.11e-180(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72832231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-35bHLH family protein