PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04967g00009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 218aa MW: 24986.8 Da PI: 6.3687

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04967g00009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.7e-05	73	113	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+++ + ++ L++l+P+ + + K + i+ + +++Ik L+ Niben101Scf04967g00009.1 73 RRKMAEMYSLLQSLVPTlS---NVHKETRENIVAESTDHIKRLE 113 89*************44...9999*************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.804	60	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-7	70	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-7	71	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS51671	10.448	153	218	IPR002912	ACT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0016597	Molecular Function	amino acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MWKEMMKEET EEEEIERLFM GVMEGYKDAC IPPLTDFSTT NEMVSLNYGN RQRKEGPILE 60 NESINIQKGR EGRRKMAEMY SLLQSLVPTL SNVHKETREN IVAESTDHIK RLEQEIARLE 120 NLKKSFLVDK PTLSQCRNRF SSVSVTVSKG LAIFGIQFQL SQGVMTNIFC VLDKHHAEVL 180 AANISVSDHR IATLTITVMI RNNKSDIVEN IQRELLLV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009630063.1	1e-124	PREDICTED: uncharacterized protein LOC104120081
Refseq	XP_009803955.1	1e-125	PREDICTED: uncharacterized protein LOC104249264
Refseq	XP_016496901.1	1e-124	PREDICTED: uncharacterized protein LOC107815786
TrEMBL	A0A1S4C726	1e-123	A0A1S4C726_TOBAC; uncharacterized protein LOC107815786
TrEMBL	A0A1U7YZ10	1e-123	A0A1U7YZ10_NICSY; uncharacterized protein LOC104249264
STRING	XP_009803955.1	1e-124	(Nicotiana sylvestris)
STRING	XP_009630063.1	1e-124	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13248	14	15