PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04981g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family BES1
Protein Properties Length: 694aa    MW: 77729.1 Da    PI: 5.5776
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04981g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822142.53.8e-44682141137
                    DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagss 85 
                               ggs+r ++ +E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++  s+ + + +++g+ 
  Niben101Scf04981g00008.1  68 GGSRRCRPLEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSHSQVTGATGGTP 152
                               6899*****************************************************************9555544344444444 PP

                    DUF822  86 as.........aspesslq.sslkssalaspvesysaspksssfpspssldsislasaasll 137
                               ++          +++s+   ++ + s +++ ++++++++ks+ +p +s +ds s+a ++++ 
  Niben101Scf04981g00008.1 153 TTmvtsssshiPTQHSPPAsLKGTPSGFQTTADHSACQMKSVFIPTSSPYDSSSTARSQTSA 214
                               44000000111344444443444568899999*******************99887654443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.1E-3769208IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514453.2E-179251688IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.802.8E-195254688IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.1E-106260680IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-69291305IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-69312330IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-69334355IPR001554Glycoside hydrolase, family 14
PRINTSPR008429.5E-7417426IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.7E-69427449IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-69500519IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-69534550IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-69551562IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-69569592IPR001554Glycoside hydrolase, family 14
PRINTSPR008429.5E-7572582IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.7E-69609631IPR001554Glycoside hydrolase, family 14
PRINTSPR008429.5E-7660674IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008429.5E-7675689IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MASEMQRYDT NEDDEEMDVK EEDDEDDDDE DKNGTMHAMA GFDGAHGSSS SNRYQHHQQY  60
QEPPTPQGGS RRCRPLEEKE RTKLRERQRR AITAKILAGL RRHGNYNLRV RADINDVIAA  120
LAREAGWVVL PDGTTFPSKS HSQVTGATGG TPTTMVTSSS SHIPTQHSPP ASLKGTPSGF  180
QTTADHSACQ MKSVFIPTSS PYDSSSTARS QTSAMVADGQ DTQNDPFLVG SGDSLDKQVI  240
DIHTKLQERD FAGTPYIPVY VMLPLGVINM KSELVDADGL VKQLRVLKSI NVDGVMVDCW  300
WGIVEANAPH DYNWNGYKRL FQVVREHKLK IKVVMSFHEC GGNIGDDVCI PLPHWVSEIG  360
RSNPDIYFRD RAGRRNPECL SWGIDKERVL KGRTAVEVYF DYMRSFRVEF DEFFEDDIIS  420
MVEVGLGPCG ELRYPSNPVK HGWRYPGVGE FQCYDQYLLK SLRKAAEARG HSFWARGPDN  480
AGSYNSQPQE SGFFCDGGDY DGYYGRFFLN WYSQVLVDHA DRVLSLAKLA FDGTCIAAKL  540
SGIHWWYKTS SHAAELTAGF YNPSNRDGYV AIVAMLKKHG AALNFKCAEM SMLEQAVDFS  600
EALGDPEGLA WQVLNAAWDV SLPVCSENAL LCHDRGGYNC LLEKAKLLND LDGKHIFAFT  660
YLRLGPLLID GQNFMEFERF VKRMHGEAVL EFQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bfn_A1e-14425668711444BETA-AMYLASE
1btc_A1e-1442566877440BETA-AMYLASE
1bya_A1e-14425668711444BETA-AMYLASE
1byb_A1e-14425668711444BETA-AMYLASE
1byc_A1e-14425668711444BETA-AMYLASE
1byd_A1e-14425668711444BETA-AMYLASE
1q6c_A1e-14425668711444beta-amylase
1wdp_A1e-14425668711444Beta-amylase
1wdr_A1e-14425668711444Beta-amylase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772614.10.0PREDICTED: beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A1U7WD880.0A0A1U7WD88_NICSY; Beta-amylase
STRINGXP_009772614.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]