PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04988g01015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 606aa    MW: 69381.1 Da    PI: 6.9024
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04988g01015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07506552247
                               SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 
                               ++WT+eE+e+++d v+   +    Wk   + ++  +t+++++s+++++
  Niben101Scf04988g01015.1 506 LSWTAEEEERFKDMVRSSATSnnKWKNSKKLLP-SKTRNMLVSYYFNV 552
                               68**************99877889***999999.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101116.265183IPR001606ARID DNA-binding domain
SMARTSM005012.1E-4184IPR001606ARID DNA-binding domain
SMARTSM010140.0015479No hitNo description
PfamPF013881.2E-91379IPR001606ARID DNA-binding domain
SuperFamilySSF467746.93E-161484IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.602.9E-121484IPR001606ARID DNA-binding domain
PROSITE profilePS511569.124406450IPR000949ELM2 domain
CDDcd001672.41E-4507553No hitNo description
PROSITE profilePS500905.993507553IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-4507552IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MAVMAVVTEK KCVRPLPVIT GSGQPLDLFK LYWIVRKIGG YDRVSSKNLW GFVSEHCGLD  60
VGTVAFVRLV YVKYLAEFDN WLRQFCKDGN LEKGEGGVIR GLDLLSKELE TRFRRLLLRR  120
CQKKKDTNLL PSENDQVDFE MFTAESVNKT NDHTTRRSYS AENSNGNLYN SDEISISKMD  180
DDYVFLVSAE GIVEKVLYKA PDKSNNEYDD DENFFAHDGK NKVTSNGEVI QRAASAKSVI  240
ENVFDSRKRK RESSCFSGML NWINHAAKHS NDPEIGEVPE SSKWKGHTSN EFWFQVLLVK  300
EALLKRRHID TKAEESNPQK KQRMHPSMYE EERFNNQPTE NLRCSKRIPV SPKHAPCPCC  360
NSCSTSHNKA ATHQKEEEED IRPDLTSVEV SVTKKIDDSG DQQTHPEVSV GPLHQAEVPE  420
WSGVISESDS KWLGTQMWPP EVETTKSLVE LDPIGEGRRS SCGCRFPQSV ECIRFHIAEK  480
RFKLKLELGP LFNRWRFDRM GEEVSLSWTA EEEERFKDMV RSSATSNNKW KNSKKLLPSK  540
TRNMLVSYYF NVFLIRRRSY QNRVTPKELD SDDDEIELGS VGDSFGNIAV HIPSSRSLTC  600
VENKTD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113124RRLLLRRCQKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250935.10.0PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2
TrEMBLA0A1J6IUN60.0A0A1J6IUN6_NICAT; At-rich interactive domain-containing protein 2
STRINGXP_009790417.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA947234