PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04995g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 198aa    MW: 21870 Da    PI: 4.9359
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04995g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.44.7e-17140186455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Niben101Scf04995g00002.1 140 VHNLSEKRRRSRINEKLKALQTLIPNS-----NKTDKASMLDEAIEYLKQLQ 186
                               6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-19133191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-19133190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.898136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.84E-18139190No hitNo description
PfamPF000101.2E-14140186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-18142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MADPYRTNPH PHASSSPLES EDMSSFFLNF LQNSSASTSA AGAGFYHRSA PETAADSSSN  60
LNFTDPGRFY AAEFKEGVEN VFASAGLGDC DAMDSANRRE FLEDDKVDNF GFSSEECDGL  120
DMPANQNHSR SSKRSRSAEV HNLSEKRRRS RINEKLKALQ TLIPNSNKTD KASMLDEAIE  180
YLKQLQLQVQ VSVLAFSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235955.11e-122PREDICTED: transcription factor SPATULA-like
TrEMBLA0A1J6KNT81e-121A0A1J6KNT8_NICAT; Transcription factor spatula
STRINGXP_009627217.11e-118(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75432328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-22bHLH family protein