PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05036g01002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 149aa MW: 17435 Da PI: 9.4637

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05036g01002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.5	1e-56	4	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+ ++ky++g+r+nrat++gyW Niben101Scf05036g01002.1 4 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPCNRKYPNGSRTNRATEAGYW 87 79**************************.99***********6434555777*********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katgkd++v s + ++vg+kktLv+y+grap+g +tdWvmheyrl Niben101Scf05036g01002.1 88 KATGKDRKVNS-QMRAVGMKKTLVYYRGRAPHGGRTDWVMHEYRL 131 *******.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.89E-60	2	136	IPR003441	NAC domain
PROSITE profile	PS51005	56.128	4	149	IPR003441	NAC domain
Pfam	PF02365	1.0E-30	5	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MVSLPPGFRF HPTDEELVAY YLKRKINGRK IELEIIPEVD LYKCEPWDLP GKSLLPSKDL 60 EWYFFSPCNR KYPNGSRTNR ATEAGYWKAT GKDRKVNSQM RAVGMKKTLV YYRGRAPHGG 120 RTDWVMHEYR LDERECEVAN GLQSVVLNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-54	2	131	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009774486.1	1e-102	PREDICTED: NAC domain-containing protein 67-like, partial
Refseq	XP_016490095.1	1e-102	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	1e-84	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A1S4BMM0	1e-100	A0A1S4BMM0_TOBAC; NAC domain-containing protein 86-like
TrEMBL	A0A1U7WB83	1e-100	A0A1U7WB83_NICSY; NAC domain-containing protein 67-like
STRING	XP_009774486.1	1e-101	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4621	24	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	7e-89	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]