PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05081g01016.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 213aa MW: 22592.6 Da PI: 9.9527

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05081g01016.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.3	2.8e-34	56	127	5	74
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+ a+pai+++tg+++ ++ ++ + Niben101Scf05081g01016.1 56 ASSNKDRHTKVNGRGRRVRMPALCAARVFQLTKELGHRTDGETIEWLLRHAEPAIIAATGSGTVPSGHVitT 127 5789*********************************************************88888555332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.0E-29	58	123	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.195	59	113	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MGSDIVLHHN FTPPPTPSTG AVAVTGSGGT NSVSNDKNAL VVGPKKKHSL STRIAASSNK 60 DRHTKVNGRG RRVRMPALCA ARVFQLTKEL GHRTDGETIE WLLRHAEPAI IAATGSGTVP 120 SGHVITTAES LPLSRSPPSV LAPVSRTQPV SGFPVSGGIF SMTSPPSCRL DLYQPVLEFS 180 GNEYRHMPFT ALLLQPVTAD DGEKKVVGED ENK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019251615.1	1e-145	PREDICTED: transcription factor TCP11
Swissprot	Q9SJK7	9e-39	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A1J6IUH0	1e-144	A0A1J6IUH0_NICAT; Transcription factor tcp11
STRING	XP_009794398.1	1e-138	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	1e-40	TCP family protein