PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05082g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 90aa    MW: 10648.1 Da    PI: 10.0319
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05082g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.2e-11248246
                              SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                              g+WTt   +++ +a +++  +   +W+ Iar +g g+++++++ ++  
  Niben101Scf05082g00002.1  2 GSWTTKQNKRFEEALALYDRDtpdRWHNIARSVG-GKSAEEVRRHYEL 48
                              89*****************99*************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.909154IPR017884SANT domain
SMARTSM007172.6E-7152IPR001005SANT/Myb domain
PfamPF002491.4E-8248IPR001005SANT/Myb domain
SuperFamilySSF466894.81E-13257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-5356IPR009057Homeodomain-like
CDDcd001674.53E-7350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MGSWTTKQNK RFEEALALYD RDTPDRWHNI ARSVGGKSAE EVRRHYELLL KDIMQIENDQ  60
VPLPKYKPAQ TNVRGYANHE QRLLKNLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-274901193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774057.15e-58PREDICTED: protein RADIALIS-like 5
SwissprotQ1A1732e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1U7W1Y51e-56A0A1U7W1Y5_NICSY; protein RADIALIS-like 5
STRINGXP_009774057.12e-57(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.28e-37RAD-like 6