PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05108g02017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 404aa    MW: 44441.4 Da    PI: 4.8245
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05108g02017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.8e-06444539
                  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                              +C+ ++e++ + +C+++  +lC +C  + H+       H++
  Niben101Scf05108g02017.1  4 TCEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44
                              7*****************************65677777765 PP
2zf-B_box27.37.6e-094688440
                  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                               +C++++++++++ C + +  lC++C   +H +      H+++
  Niben101Scf05108g02017.1 46 LVCERCNSQPAIFRCVEERISLCQNCDWIGHANsssgstHKRQ 88
                              68*****************************888888999876 PP
3CCT60.84.6e-21347390144
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                               R  a+lRYkeK+ktR+F+K++rY+sRKa+A+ R RvKGrFvk+ 
  Niben101Scf05108g02017.1 347 RIDAVLRYKEKKKTRQFDKRVRYASRKARADVRRRVKGRFVKAG 390
                               66799************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.271147IPR000315B-box-type zinc finger
SMARTSM003362.1E-7447IPR000315B-box-type zinc finger
CDDcd000218.21E-7547No hitNo description
PROSITE profilePS501198.8164390IPR000315B-box-type zinc finger
CDDcd000218.03E-44790No hitNo description
SMARTSM003362.24890IPR000315B-box-type zinc finger
PfamPF062039.8E-16347389IPR010402CCT domain
PROSITE profilePS5101715.011347389IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MGYTCEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLVCER CNSQPAIFRC  60
VEERISLCQN CDWIGHANSS SGSTHKRQAL SCYTGCPSAV ELSTIWSFLL DNPSVGDSTC  120
EQGMGSMSIT DCRPGDSRGS QAKDKSQDTS VAVETNDFMG SSTPSLDNKL HYVEPPVGST  180
NLTWSKVSNS VTKGSNLFDD DPFYDDFNMD EVDLSIGNYE ELFGVSLDNP DQLFKNEDID  240
GLFGMKDLPV AESSCQGDNA VEGSAVRRVN TVQPACSNAV SEESMMSCKT EPALCFARQQ  300
SNLSVSNLTG ESSAGDYQDC GASSMLLMGE PPWCSPCPEI SMPSTSRIDA VLRYKEKKKT  360
RQFDKRVRYA SRKARADVRR RVKGRFVKAG DAYDYDPLSE TRSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768363.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_009768364.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_016460896.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_016460897.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_016460898.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9LUA91e-135COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A1S3Z9K50.0A0A1S3Z9K5_TOBAC; zinc finger protein CONSTANS-LIKE 9-like
TrEMBLA0A1U7VPN60.0A0A1U7VPN6_NICSY; zinc finger protein CONSTANS-LIKE 9-like
STRINGXP_009768363.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-123B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]