PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05118g04012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 148aa    MW: 17518.3 Da    PI: 10.3203
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05118g04012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-0748762248
                              T...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding 22 g...tWktIartmgkgRtlkqcksrwqkyl 48
                              +   +W +Ia+ ++ gRt++++k+ w+++l
  Niben101Scf05118g04012.1 48 RlrlRWVAIASQLP-GRTDNEIKNLWNTHL 76
                              46667*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.16E-84279IPR009057Homeodomain-like
PfamPF002491.4E-54576IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-115177IPR009057Homeodomain-like
PROSITE profilePS500906.2145276IPR017877Myb-like domain
CDDcd001671.24E-45276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDIDITASTK PKYLVIDRSP PFTKIVANCN TLYCLSSHHY LQHLHDCRLR LRWVAIASQL  60
PGRTDNEIKN LWNTHLKKRR ALILVLANHH HLQPIISLHN VKALGSKLKL VFLRNRISSF  120
HHQEEGLFPH MELKRDWRSI YEFEESRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.15e-13myb domain protein 17