PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05135g03009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 277aa    MW: 30773.1 Da    PI: 9.7856
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05135g03009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017.1e-32206263359
                               -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Niben101Scf05135g03009.1 206 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHNHS 263
                               99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.8E-19156202IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.9E-33192263IPR003657WRKY domain
PROSITE profilePS5081131.054199265IPR003657WRKY domain
SuperFamilySSF1182902.88E-27201263IPR003657WRKY domain
SMARTSM007742.7E-38204264IPR003657WRKY domain
PfamPF031062.2E-27206262IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAVELMMDYR NCTLVTKLEE KTLVQEASSG LESVEKLIKL LSQTQSQQIQ QQKQGYLEQK  60
NSPMEIGMVA DAAVTKFKKI PLVSYDNYNQ QLPLVPKTIS FSYSPEMSRT NSFNISTLTG  120
ETESKQHSSS SAFQITNLSQ VSNSTGKPPL SSSSLKRKCS LSENAVSGKC SGSSGRCHCS  180
KRRKLRLKRV VRVPAISMKL ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK  240
HVERALDDPT MLIVTYEGEH NHSLSVAETS SLILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22192264273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764184.11e-177PREDICTED: probable WRKY transcription factor 7
RefseqXP_016479490.11e-177PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX05e-73WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1S4ASF71e-175A0A1S4ASF7_TOBAC; probable WRKY transcription factor 7
TrEMBLA0A1U7VPA61e-175A0A1U7VPA6_NICSY; probable WRKY transcription factor 7
STRINGXP_009764184.11e-176(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.11e-55WRKY DNA-binding protein 15