PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05146g00010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

BBR-BPC

Protein Properties

Length: 383aa MW: 42702.9 Da PI: 10.1229

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05146g00010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	298	3.6e-91	1	306	1	296
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki..rernlalsekkaavaerd......................... 57 md +g++ rn+g++epa + lk +lglqlm+s+ e+ r++++ ++++++++++ Niben101Scf05146g00010.1 1 MDGNGMNIRNWGFFEPAaTVLKGHLGLQLMASMDEKPLFGniRDHHHHHHHNHQTHQPHHptvmestnggafhhhrvcgiletpm 85 88888877******9999*********7665322557766666666666666667889999999999999****9 PP GAGA_bind 58 .maflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaa 141 ++ +rd+++++ + ++k+l++l ++ + +g++ ++t+s++s+q +++p+l + + +le+ +e+ Niben101Scf05146g00010.1 86 pTEY-MRDSWVNH-----KDYREKYLSVLSGNH----HYLTGYGFFPETSSAQSMQIHEQPNLVKVEPD----PQLEEVCLERDI 156 8899.9**9.....456778888877554....57789***********888887766655....333444455555 PP GAGA_bind 142 eeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWG 226 +k+ k+q k+pk+k+akk+++ ++k +++++ +r++a++ks ++v+ng+++D+s +P+P+CsCtGa +qCY+WG Niben101Scf05146g00010.1 157 GGLAKKRGAGKSQLLKSPKSKRAKKATR---VPKVESTPSV--PRARAPRKSAEVVINGITMDISVIPIPICSCTGAAQQCYRWG 236 5566666666677778887777777777...4444444444..79************************************ PP GAGA_bind 227 nGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnk 296 +GGWqSaCCtt++S yPLP+++krrg+RiagrKmS gaf+k+LekLa+eGy++sn++DLk +WAkHGtnk Niben101Scf05146g00010.1 237 CGGWQSACCTTNLSSYPLPMNAKRRGSRIAGRKMSLGAFTKVLEKLASEGYNFSNAIDLKPYWAKHGTNK 306 *******************************************************************8 PP
2	GAGA_bind	173.6	2.8e-53	306	383	224	301
GAGA_bind 224 kWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 kWG+GGWqSaCCtt++S yPLP+++krrg+RiagrKmS gaf+k+LekLa+eGy++sn++DLk +WAkHGtnkfvtir Niben101Scf05146g00010.1 306 KWGCGGWQSACCTTNLSSYPLPMNAKRRGSRIAGRKMSLGAFTKVLEKLASEGYNFSNAIDLKPYWAKHGTNKFVTIR 383 8****************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	8.8E-133	1	306	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	3.1E-95	2	306	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.3E-51	306	383	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	1.1E-9	307	383	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MDGNGMNIRN WGFFEPAATV LKGHLGLQLM ASMDEKPLFG NIRDHHHHHH HNHQTHQPHH 60 PTVMESTNGG AFHHHRVCGI LETPMPTEYM RDSWVNHKDY REKYLSVLSG NHHYLTGYGF 120 FPETSSAQSM QIHEQPNLVK VEPDPQLEEV CLERDIGGLA KKRGAGKSQL LKSPKSKRAK 180 KATRVPKVES TPSVPRARAP RKSAEVVING ITMDISVIPI PICSCTGAAQ QCYRWGCGGW 240 QSACCTTNLS SYPLPMNAKR RGSRIAGRKM SLGAFTKVLE KLASEGYNFS NAIDLKPYWA 300 KHGTNKWGCG GWQSACCTTN LSSYPLPMNA KRRGSRIAGR KMSLGAFTKV LEKLASEGYN 360 FSNAIDLKPY WAKHGTNKFV TIR

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MDGNGMNIRN WGFFEPAATV LKGHLGLQLM ASMDEKPLFG NIRDHHHHHH HNHQTHQPHH  60
PTVMESTNGG AFHHHRVCGI LETPMPTEYM RDSWVNHKDY REKYLSVLSG NHHYLTGYGF  120
FPETSSAQSM QIHEQPNLVK VEPDPQLEEV CLERDIGGLA KKRGAGKSQL LKSPKSKRAK  180
KATRVPKVES TPSVPRARAP RKSAEVVING ITMDISVIPI PICSCTGAAQ QCYRWGCGGW  240
QSACCTTNLS SYPLPMNAKR RGSRIAGRKM SLGAFTKVLE KLASEGYNFS NAIDLKPYWA  300
KHGTNKWGCG GWQSACCTTN LSSYPLPMNA KRRGSRIAGR KMSLGAFTKV LEKLASEGYN  360
FSNAIDLKPY WAKHGTNKFV TIR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761371.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Refseq	XP_009761378.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Refseq	XP_016499158.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Refseq	XP_016499159.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Swissprot	Q9LDE2	1e-74	BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBL	A0A1S4CDX5	0.0	A0A1S4CDX5_TOBAC; protein BASIC PENTACYSTEINE2-like
TrEMBL	A0A1U7V4R1	0.0	A0A1U7V4R1_NICSY; protein BASIC PENTACYSTEINE2-like
STRING	XP_009761371.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10048	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	4e-76	basic pentacysteine 2

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368]