PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05154g01016.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 225aa MW: 26530.1 Da PI: 5.1838

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05154g01016.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.1	1.3e-26	136	185	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++l+++++yF+ pi++AAkeL v+lTvLK++CR+++I+RWPhRkiksl Niben101Scf05154g01016.1 136 DTLELDEIQRYFHVPINKAAKELRVGLTVLKKRCRELNIMRWPHRKIKSL 185 7899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.427	119	207	IPR003035	RWP-RK domain
Pfam	PF02042	7.0E-24	137	185	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MDSHHVLTLE NQNDQFDWLY SEHPPSPFGT WQQQDSRILS NGGLFNFHYF DPFQFPNDLQ 60 NNNLPFFELN ELEEICQDLG TLDVKLPPFQ EDMTFTPLQE CQNVTSNMIS SGEIINGTNK 120 ELIRKRNNNG RHKKSDTLEL DEIQRYFHVP INKAAKELRV GLTVLKKRCR ELNIMRWPHR 180 KIKSLITLID SVKEMGLTSE VEMLEEHQRM LEKVPEMELT ERLVF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016471868.1	1e-144	PREDICTED: protein RKD4-like
TrEMBL	A0A1S4A5E2	1e-143	A0A1S4A5E2_TOBAC; protein RKD4-like
STRING	XP_009589276.1	1e-142	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12143	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-29	RWP-RK domain-containing protein