PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05159g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 311aa    MW: 33839.5 Da    PI: 7.8453
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05159g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019212234123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++Cg  Fs+   L  H+r+H
  Niben101Scf05159g01001.1 212 HECSICGAEFSSGQALGGHMRRH 234
                               78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.74E-8132155No hitNo description
PfamPF139123.0E-12132157IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.887133160IPR007087Zinc finger, C2H2
SMARTSM003550.15133155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
SuperFamilySSF576672.74E-8207234No hitNo description
PROSITE profilePS5015711.011212239IPR007087Zinc finger, C2H2
SMARTSM003550.01212234IPR015880Zinc finger, C2H2-like
PfamPF139128.0E-13212236IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEISEDSADR TLVFKGKRSK RPRQLSLVGM AVAVTSTSST GGGGAGGGSN DIGGGGEFYS  60
SSIQYSPTTS STQISTSSEE DEDMANCLIL LAQSGRCKKL QVESSERKMV KISSRKFTEM  120
ATSTTGKAEF YVYECKTCNR TFQSFQALGG HRTSHKKAKT IIEDKKSTAD SENHDHKYHQ  180
EEEKLNKIIT PPTQIANKGN SHSDFNSKPK IHECSICGAE FSSGQALGGH MRRHRPPPPT  240
VTATNSTKVT DETTSESSHN DNENSNKEKP RTILSLDLNL PAPPEDDSKF GFSANKQSLV  300
FSPAPMVDCH Y
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264377.11e-179PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A314L4K61e-178A0A314L4K6_NICAT; Zinc finger protein zat5
STRINGXP_009776555.11e-171(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.15e-46C2H2 family protein