PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05173g08003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 161aa    MW: 18410.9 Da    PI: 10.8666
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05173g08003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.2e-183787255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                              +y GVr+++ +g+++AeIrdp     k  r +lg++ t+e+Aa a+++a+ k++g
  Niben101Scf05173g08003.1 37 RYIGVRRRP-WGKFAAEIRDP---ErKGVRLWLGTYETPEDAALAYDQAAFKIRG 87
                              699******.**********7...3235*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.4E-133787IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-223796IPR016177DNA-binding domain
PROSITE profilePS5103223.383795IPR001471AP2/ERF domain
SMARTSM003804.8E-3637101IPR001471AP2/ERF domain
CDDcd000181.79E-273797No hitNo description
Gene3DG3DSA:3.30.730.104.1E-313796IPR001471AP2/ERF domain
PRINTSPR003675.4E-123849IPR001471AP2/ERF domain
PRINTSPR003675.4E-127797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MKTEETIPHL EEKSESEEET KGHVVAREKS AAQDWRRYIG VRRRPWGKFA AEIRDPERKG  60
VRLWLGTYET PEDAALAYDQ AAFKIRGSRA RLNFPHLIGS NTPKPARVTT RHSRRRSPEP  120
SSSSCTPSSE KGTRKRKVDL INSIAKAKFI RHSCSNLQML L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2838101669ATERF1
3gcc_A5e-2838101669ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232808.11e-87PREDICTED: ethylene-responsive transcription factor 1-like
SwissprotQ404795e-40ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A1J6KYR63e-86A0A1J6KYR6_NICAT; Ethylene-responsive transcription factor 1
STRINGXP_009628238.17e-76(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-36ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]