PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05175g02005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 483aa    MW: 54325.1 Da    PI: 7.4096
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05175g02005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10122150331
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkas 31 
                               ++h+e+ErrRR+riN+ +++Lr+llP+ +
  Niben101Scf05175g02005.1 122 KSHSEAERRRRERINNHLAKLRSLLPNTT 150
                               79************************963 PP
2HLH43.55.5e-14291337354
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Niben101Scf05175g02005.1 291 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 337
                               79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.715119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-8122160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-8122149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-7123151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.044125168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.136288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-11291337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-15292357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-14292344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-13294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.27E-5301340No hitNo description
Gene3DG3DSA:3.30.70.2606.3E-4376428No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MQPQSFNINP VHFPSNSEMS QILPWTLPPV QPFNPVHHHH HVDPFLLPPA PSPYGGLFNR  60
RVPQFAYEGT TSSDHHLRFI SDTLGHVVHH QPAGSAPFGL QAELQKMTAQ EIMDAKALAA  120
SKSHSEAERR RRERINNHLA KLRSLLPNTT KCIQEQLLLQ HHQQSNQENM QPQSFNINPV  180
HFPSNSEMSQ ILPWTLPPVQ PFNPVHHHHH VDPFLLPPAP SPYGGLFNRR VPQFAYEGTT  240
SSDHHLRFIS DTLGHVVHHQ PAGSAPFGLQ AELQKMTAQE IMDAKALAAS KSHSEAERRR  300
RERINNHLAK LRSLLPNTTK TDKASLLAEV IQHVKELKRQ TSSIAETSPV PTEIDELTVD  360
NASDEFENGK FVIKASLCCE DRSDLLPDLI KTLKALRLKT LKAEITTLGG RVRNVLFITG  420
DHNYNQDDDL YTSDDLDQQQ QQRQYSISSI QEALKAVMEK SSGDDSASGS VKRQRTNNIN  480
ILS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296301ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257664.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y12e-97BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1S4C6320.0A0A1S4C632_TOBAC; transcription factor bHLH30-like
STRINGXP_009761017.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40832444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]