PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05188g03027.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 261aa MW: 27652.2 Da PI: 10.1547

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05188g03027.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.6	3.7e-37	35	131	3	100
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++ s++ ++s s+ +s+ss+ Niben101Scf05188g03027.1 35 VKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPTSFS-TVSVSVRSSSSSI 118 69999***************************************************************777.3444444443455 PP TCP 88 gkaaksaakskks 100 ++ sa+ +k+ Niben101Scf05188g03027.1 119 LTSCISAPLDHKQ 131 4555555433333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.613	40	94	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.0E-34	41	129	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MSTSAEGNGA IIDPHQRQQQ QNPSGGGGTN GALIVKKPPV KDRHSKVDGR GRRIRMPIVC 60 AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGTGTI PTSFSTVSVS VRSSSSSILT 120 SCISAPLDHK QPPSSQPLIS PAPFILGKRL RPDDETIENG HKEDVGRAAT VVGPTSGFCA 180 VPARPDFGQV WSFAAAPPEM MVPTSAALSL QSSRFFQQQM GEASAARVGN YLPMTQGHLN 240 LLASLSGPPQ PSSGRRDDDG R

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016444705.1	1e-166	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	1e-87	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1S3XXV3	1e-164	A0A1S3XXV3_TOBAC; transcription factor TCP7-like
STRING	XP_009588219.1	1e-163	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	7e-69	TCP family protein