PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05201g05003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 245aa    MW: 28658.5 Da    PI: 8.4788
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05201g05003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind79.55.4e-25201052103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y++++de+ ++++sw en+++fvv+++ efak++Lp+yFkh+nf+SF       gFkk+  ++         weF++ +F
  Niben101Scf05201g05003.1  20 FLTKTYQLVDDESSNHIVSWGENETTFVVWKPPEFAKHLLPNYFKHNNFSSF-------GFKKIVPDK---------WEFANGNF 88 
                               9**************************************************9.......9*****999.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                               kkg+k ll++i+r+ks+
  Niben101Scf05201g05003.1  89 KKGQKYLLCEIQRRKST 105
                               **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.1E-4216102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.7E-251697IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.41E-2418102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.8E-2120102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-102043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-105870IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSSSSVTVQD CERTIMAAPF LTKTYQLVDD ESSNHIVSWG ENETTFVVWK PPEFAKHLLP  60
NYFKHNNFSS FGFKKIVPDK WEFANGNFKK GQKYLLCEIQ RRKSTTQQLH HLKPYHENNT  120
KNIFYQPKTQ NNPSTNDILL LTLTLDNQRL RKRNNFLSSE LAHMKNLYND IINFIQNQVK  180
PVDQKFNLFS LNEGLNLRIN DHCLDHQVNT EDEEPKSSSV KLFGVSLCGK KRLHHQMIDQ  240
EVLEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B6e-13201075110Heat shock factor protein 2
5d8l_B6e-13201075110Heat shock factor protein 2
5d8l_D6e-13201075110Heat shock factor protein 2
5d8l_F6e-13201075110Heat shock factor protein 2
5d8l_H6e-13201075110Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019255244.11e-154PREDICTED: heat stress transcription factor B-4b-like
SwissprotQ9C6354e-61HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A1U7Y8491e-149A0A1U7Y849_NICSY; heat stress transcription factor B-4-like
STRINGXP_009794990.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.19e-62heat shock transcription factor B4