PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05229g02004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 356aa MW: 38484.6 Da PI: 9.248

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05229g02004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.5	5.8e-39	58	175	3	105
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+ + + s +ss++ s+ Niben101Scf05229g02004.1 58 PKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTKELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANYSsLNISLRSSGNISR 142 799***************************************************************9977766666666666333 PP TCP 87 sg.............kaaksaa.kskksqksaa 105 ++ ++++s++ + +++ + + Niben101Scf05229g02004.1 143 HNyltqnlshgvglfSSENSSMgLNIFPSGNVN 175 335555555566666333333334444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.8E-37	61	159	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.583	63	117	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
METGHDNYGN SMRRPNFPLQ LLEKREDPIC STSVYPYPSA DASADQKPNQ EPNKKPHPKR 60 TSTKDRHTKV DGRGRRIRMP ATCAARVFQL TKELGHKSDG ETIEWLLQQA EPSVIAATGT 120 GTIPANYSSL NISLRSSGNI SRHNYLTQNL SHGVGLFSSE NSSMGLNIFP SGNVNMNLNA 180 MLQAKQELYC DREGNNIGRK RRSENQDLLP VLQNYHMGNN YMLQTSNSGY IPANYQGQIP 240 ATTLYMMANN SSHDPNSMWT FPSTIGNSNI RGGSLTNSGL LNFMNSHPSV LGQHSGGSGG 300 GGGGGGGGRG TVVEGQMGML TAMNSLRQLG HASGSSNQHN GADDHGNNGH HVIIHN

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

METGHDNYGN SMRRPNFPLQ LLEKREDPIC STSVYPYPSA DASADQKPNQ EPNKKPHPKR  60
TSTKDRHTKV DGRGRRIRMP ATCAARVFQL TKELGHKSDG ETIEWLLQQA EPSVIAATGT  120
GTIPANYSSL NISLRSSGNI SRHNYLTQNL SHGVGLFSSE NSSMGLNIFP SGNVNMNLNA  180
MLQAKQELYC DREGNNIGRK RRSENQDLLP VLQNYHMGNN YMLQTSNSGY IPANYQGQIP  240
ATTLYMMANN SSHDPNSMWT FPSTIGNSNI RGGSLTNSGL LNFMNSHPSV LGQHSGGSGG  300
GGGGGGGGRG TVVEGQMGML TAMNSLRQLG HASGSSNQHN GADDHGNNGH HVIIHN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019229066.1	0.0	PREDICTED: transcription factor TCP15-like
TrEMBL	A0A314KM93	0.0	A0A314KM93_NICAT; Transcription factor tcp15
STRING	XP_009804589.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13947	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	5e-52	TCP family protein