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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf05241g01006.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
GRAS |
| Protein Properties |
Length: 407aa MW: 46345.5 Da PI: 8.1469 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf05241g01006.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 433.4 | 1.8e-132 | 33 | 407 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklf 84
++lL++cAe +s +d+++a++lL+ ls+++sp gd+++Rl++ f +AL+ rl+r s+ + lpps+ e++ s+ +++ +
Niben101Scf05241g01006.1 33 RQLLISCAELISRSDFSAANRLLTILSTNSSPFGDSTERLIHQFIRALSLRLNRYISSATNFLPPSNVVESSndSALLQSSYLSL 117
89*************************************************************988876555324444555556* PP
GRAS 85 sevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
++v+P+++fs+ltaNqaIlea++ + +++Hi+Dfdi++G+QWp+L+qaLa+R +pp+lRiTg g+ + ++l++tg+rLakf
Niben101Scf05241g01006.1 118 NQVTPFIRFSQLTANQAILEAIKDNqQAIHIVDFDINHGVQWPPLMQALADR-YPPPTLRITGTGN----DLDTLRRTGDRLAKF 197
**********************999799***********************9.999**********....*************** PP
GRAS 169 Aeelgvpfefnvl..vakrledlel...eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248
A++lg++f+f++l + ++ +d ++ +++ + p+E+la+n+v+ lhrll+++ +l+ +L+ +ks++Pkvv+++e+ea+h
Niben101Scf05241g01006.1 198 AHSLGLRFQFHPLliTNNNDNDHDPsiiSSIVLLPDETLAINCVFYLHRLLKDREKLRI----FLHRIKSMNPKVVTLAEREANH 278
************96433355555551115556777****************99999999....********************** PP
GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
n++ Fl+rf+eal+yy+a+fdslea+lp+ s+er++vE++++grei ++va+eg++rrerhe++++W+ +l+++GF++v+ls +a
Niben101Scf05241g01006.1 279 NHPLFLQRFVEALDYYAAVFDSLEATLPPSSRERMTVEQVWFGREIIDIVAAEGNKRRERHERFRSWEVMLRSCGFSNVALSPFA 363
************************************************************************************* PP
GRAS 334 akqaklllrkvk.sdgyrve..eesgslvlgWkdrpLvsvSaWr 374
+qaklllr ++ s+gy++ + s+s++lgW+++pL+svS+Wr
Niben101Scf05241g01006.1 364 LSQAKLLLRLHYpSEGYQLSvsSTSNSFFLGWQNQPLFSVSSWR 407
*****************98855779******************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 407 aa
Download sequence Send
to blast |
MLGSFGSSSQ SHDEETDDQR RRFSSTSPAI QIRQLLISCA ELISRSDFSA ANRLLTILST 60
NSSPFGDSTE RLIHQFIRAL SLRLNRYISS ATNFLPPSNV VESSNDSALL QSSYLSLNQV 120
TPFIRFSQLT ANQAILEAIK DNQQAIHIVD FDINHGVQWP PLMQALADRY PPPTLRITGT 180
GNDLDTLRRT GDRLAKFAHS LGLRFQFHPL LITNNNDNDH DPSIISSIVL LPDETLAINC 240
VFYLHRLLKD REKLRIFLHR IKSMNPKVVT LAEREANHNH PLFLQRFVEA LDYYAAVFDS 300
LEATLPPSSR ERMTVEQVWF GREIIDIVAA EGNKRRERHE RFRSWEVMLR SCGFSNVALS 360
PFALSQAKLL LRLHYPSEGY QLSVSSTSNS FFLGWQNQPL FSVSSWR
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
