PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05324g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 528aa    MW: 59034.3 Da    PI: 6.7243
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05324g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.11.3e-25195248155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               k+r++Wt +LH++Fv+av+q+ G +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Niben101Scf05324g01002.1 195 KARVVWTVDLHQKFVKAVNQI-GFDKAGPKKILDLMGVPWLTRENVASHLQKYRL 248
                               68*******************.********************************8 PP
2Response_reg82.51.3e-27251331109
                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS
              Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 
                               vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge 
  Niben101Scf05324g01002.1  25 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALNLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGET 107
                               89*********************.***************999999**********************6644.8************ PP

                               HHHHHHHHTTESEEEESS--HHHHHH CS
              Response_reg  84 edalealkaGakdflsKpfdpeelvk 109
                               + + + ++ Ga d+l Kp+ ++el++
  Niben101Scf05324g01002.1 108 SRVMKGVQHGACDYLLKPIRMKELRN 133
                               ***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.6E-4522159No hitNo description
SuperFamilySSF521721.31E-3622147IPR011006CheY-like superfamily
SMARTSM004481.4E-3223135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.12724139IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2425134IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.37E-3126139No hitNo description
PROSITE profilePS512949.761192251IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-28193253IPR009057Homeodomain-like
SuperFamilySSF466897.53E-18193252IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-22195248IPR006447Myb domain, plants
PfamPF002493.3E-8197247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MMENSKSTAG FSSPRSDNFP AGLRVLVVDD DPTWLKILEK MLKKCSYEVT TCGLAREALN  60
LLRERKDGFD IVISDVNMPD MDGFKLLEHV GLEMDLPVIM MSVDGETSRV MKGVQHGACD  120
YLLKPIRMKE LRNIWQHVLR KRMHEARDIG NHEMDQFDEV WMLNGTELLS GKKRKDFDNE  180
KEISDSRCVD SSMKKARVVW TVDLHQKFVK AVNQIGFDKA GPKKILDLMG VPWLTRENVA  240
SHLQKYRLYL TRLQKENEVK ASFCGMKHPN VSSKQNSPQN PVEVCTDVTN DKCSGVSGDK  300
AIVQNGKANI YKSNVKGVVS MPVTASRSVV GDNFGSKKSL SDSFGYFKAR FPSEIGLCNQ  360
PLPGMDCTQP TCSLNFVPSH EVRDRVSSKE NKPSFFKSRS GVGKLSALEA IQPVSHQINF  420
HALEQIPSTT WSMTSQNVDQ NLVNGLQSIP GNLTLGSGSV VASLGEDDSI ECFPAYNDCL  480
RNIQQFDYSD PQTISGVPTC LYDTLRFDYE YPNDSLEGIV LDQGLFIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-18191253163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464421.10.0PREDICTED: two-component response regulator ARR11-like
SwissprotQ9FXD61e-125ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A1S3ZJB40.0A0A1S3ZJB4_TOBAC; two-component response regulator ARR11-like
STRINGXP_009793670.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-117response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]