PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05349g02002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 297aa MW: 33822.7 Da PI: 9.0032

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05349g02002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.5	5.5e-49	11	136	1	125
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgy 82 +ppGfrFhPtdeel+++yLkkk++ +k+++ evi+evd++k+ePw+L++++k ++ewyfFs++d+ky+tg+r+nrat++g+ Niben101Scf05349g02002.1 11 VPPGFRFHPTDEELLHYYLKKKLSFHKFDM-EVIREVDLNKMEPWELQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGF 94 69**************************.99**********964444222455********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhe 125 Wkatg+dk + + +++++g++ktLvfy+grap+g+ktd +mhe Niben101Scf05349g02002.1 95 WKATGRDKCIRN-TSKKIGMRKTLVFYRGRAPHGQKTDLIMHE 136 *******9.9999***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-49	10	136	IPR003441	NAC domain
PROSITE profile	PS51005	46.261	11	162	IPR003441	NAC domain
Pfam	PF02365	1.5E-23	12	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MASSGGGGGG VPPGFRFHPT DEELLHYYLK KKLSFHKFDM EVIREVDLNK MEPWELQERC 60 KIGSTPQNEW YFFSHKDRKY PTGSRTNRAT NAGFWKATGR DKCIRNTSKK IGMRKTLVFY 120 RGRAPHGQKT DLIMHEVFKK KNVFKVIGNN EGSAASSDLL NNTSIHQHRT TFTHKDSPYL 180 LQQHQQHDHD HGFNYSHIPT AVAATFPHEY NPHNNNIQLA QNFMSLGYNH DFSSGPLPTS 240 QQSAPCESGL EVASSHQNMN NDQWGIISED ANVASSSMNQ INHLPLRGEM DFWSYGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-43	11	136	15	137	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629334.1	0.0	PREDICTED: protein BEARSKIN2-like
Swissprot	Q9SV87	1e-101	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A314KKI0	0.0	A0A314KKI0_NICAT; Protein bearskin2
STRING	XP_009629334.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	5e-85	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]