PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05357g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 259aa    MW: 29564.1 Da    PI: 10.0305
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05357g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.88.9e-1619102186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                               +W++  + +Liea  ++  rl+rg+l++++W+ev++++  r+ g+  +r+ +qCk++++ l+k+yk +k+ ++       s++p+
  Niben101Scf05357g00006.1  19 CWSEGATETLIEAWGDRYVRLNRGNLRQKDWKEVADNVnsRQNGVkpQRTDVQCKNRIDTLKKKYKLEKTKSSP------SKWPF 97 
                               7*************************************98777776689******************9998886......58*** PP

                  trihelix  82 fdqle 86 
                               +++l+
  Niben101Scf05357g00006.1  98 YNRLD 102
                               **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-2717102No hitNo description
Gene3DG3DSA:1.10.10.605.3E-44585IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MESQTAAPTR PHAGGREDCW SEGATETLIE AWGDRYVRLN RGNLRQKDWK EVADNVNSRQ  60
NGVKPQRTDV QCKNRIDTLK KKYKLEKTKS SPSKWPFYNR LDYLIGTNNV STSPCNRKLT  120
AAITLTVKSN SNPNFGAMNY SGSSSRMNSS GSNYSSHDDL PFGSGGRKNK MEYVGLAEET  180
TAYKELARAI LRFGEIYERI ESTKQQQMVE LEKQRMEFTK DLEVQRMNIF METQLQIERA  240
KRPARHPAST VNRSSGFQD
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786679.11e-160PREDICTED: uncharacterized protein LOC104234753
SwissprotQ9LJG88e-34ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1U7XIA31e-158A0A1U7XIA3_NICSY; uncharacterized protein LOC104234753
STRINGXP_009786679.11e-159(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137071215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.24e-64sequence-specific DNA binding transcription factors