PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05363g03006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 255aa    MW: 29589.7 Da    PI: 5.9319
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05363g03006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.98.2e-2361246128
                       NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                               +F+P+d el+++ L k ++gk l++e  i  +d+y+ ePw+L      ++k  yf ++ +kk++t++r nr+t +g+W ++ k k
  Niben101Scf05363g03006.1   6 QFRPSDTELIMQ-LLKFLAGKCLPTEGLIGFADVYSKEPWQLI---GDTKKTHYFLTQLKKKKPTDTRFNRTTCNGTWTQQNKGK 86 
                               7*********77.667889999999899**************6...345567899999*************************** PP

                       NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               e+l++ ++  +g k++L +  +++ +  + +W+m ey l
  Niben101Scf05363g03006.1  87 EILDEdESLIIGYKRSLSYK-NKKDSFLNGRWLMMEYFL 124
                               ****8455569*******97.6777779*********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.4741148IPR003441NAC domain
PfamPF023652.9E-116123IPR003441NAC domain
SuperFamilySSF1019411.57E-226147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEKNGQFRPS DTELIMQLLK FLAGKCLPTE GLIGFADVYS KEPWQLIGDT KKTHYFLTQL  60
KKKKPTDTRF NRTTCNGTWT QQNKGKEILD EDESLIIGYK RSLSYKNKKD SFLNGRWLMM  120
EYFLADSLLQ QLKSNEAKEF VICAIKKNPR SEIRGNSIAT VVEYKRFIDR VLQEPSQQST  180
MIFSKNNPMM LESTSSDTFS VEQLEPKDGM LVQTDSDGFF GMLNMENYRK DEVEVYWNSI  240
LDFGDHGLVQ NDLLY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238036.11e-175PREDICTED: uncharacterized protein LOC109218154
TrEMBLA0A1J6KJL41e-173A0A1J6KJL4_NICAT; Nac domain-containing protein 41
STRINGXP_009628603.11e-148(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9815725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.11e-15NAC domain containing protein 96